16S and 18S rRNA gene amplicon sequences |
16S and 18S rRNA gene amplicon sequences |
HHQSignals |
tax_ID |
All taxa colonization counts |
EPR colonizer counts |
Larval supply at EPR vents, EPR Functional Diversity |
scientificNameID, AphiaID |
all_species_seen |
All the species seen during broad-scale cruises from the US-GLOBEC Georges Bank Program. |
GB |
taxon_code |
anemone observations log |
anemone log |
Reef Fish Resilience |
anem_spp |
artificial and transplant reef census |
2010 census data at artificial and transplant reefs at Lee Stocking Island, Bahamas. |
Lionfish Invasion |
species_code |
Atlantic silverside RNA-seq reads |
|
GenomAdapt |
taxonomy_id |
Bag Seine Catch Data |
Monthly bag seine catch data of vertebrates and invertebrates from bays along the Texas coast from 1982 to 2016 |
Texas Coastal Fish |
species_code |
Belize core data |
MBRS coral core data |
Thermal History and Coral Growth |
species_code, species |
benthic invert codes |
Benthic invertebrate taxonomy, species and codes - St. John USVI survey 1988-2007 |
St. John LTREB |
species_code |
BioLog Eco-plates experiment - 14C-labeled uptake |
BioLog Eco-plates experiment - 14C-labeled uptake |
Cocco-Mix |
CCMP_code |
BioLog Eco-plates experiment - Metabolic potential |
BioLog Eco-plates experiment - Metabolic potential |
Cocco-Mix |
Strain_code |
Clam Outplants |
Clam outplants in Seadrift and Bolinas Lagoon for 2015 |
Invasive_predator_harvest |
species_code |
clownfish log |
clownfish log |
Reef Fish Resilience |
fish_spp |
codes: species and dive types |
data codes |
Reef Fish Resilience |
Code |
Composition of experimental marine invertebrate communities across latitude |
Composition of experimental marine invertebrate communities across latitude |
Competition and Predation across Latitude |
Taxa_num |
Composition of marine invertebrate communities across latitude with exposure to predation |
|
Competition and Predation across Latitude |
Taxa_num |
Coral health survey |
Coral health survey, Guam 2014 |
Reef Resilience in Guam |
taxon_code |
CPR plankton occurrence 2014-2019 |
Continous Plankton Recorder zooplankton and phytoplankton counts Atlantic 2014-2019 |
CPR Plankton Survey |
taxonID, scientificNameID |
CPR: Phytoplankton occurrence |
Continous Plankton Recorder zooplankton occurrence data |
CPR Plankton Survey |
taxonID, scientificNameID |
CPR: Zooplankton occurrence |
Continous Plankton Recorder zooplankton occurrence data |
CPR Plankton Survey |
taxonID, scientificNameID |
Cross Bay Demographics |
Demographic data for introduced crab from multiple bays 2009-2016 |
Invasive_predator_harvest |
species_code |
Deep-sea larvae for microbiome study |
Deep-sea larvae for microbiome study |
EPR Functional Diversity, Mariana Back-arc Vents, Metacommunity Dynamics |
scientificNameID |
EPR vent colonists functional traits |
|
EPR Functional Diversity |
scientificNameID, AphiaID |
fairy basslet counts post-invasion |
Counts of fairy basslet on Bahamian reefs after invasion by red lionfish. |
Lionfish Invasion |
species_code |
Fish and Invertebrate Transects |
|
Reef Fish Resilience |
Species |
Fish species code key |
Fish species code key |
Larval Dispersal in Kelp Rockfish |
pisco_classcode |
fish species counts |
Fish species counts in 3, 20x40 m transects, Panama (1980-2010) |
EPac Corals 1982/82 El Nino: VII, EPac Corals 1982/82 El Nino: VI, EPac Corals 1982/83 El Nino: III, EPac Corals 1982/83 El Nino: II, EPac Corals 1982/83 El Nino: IV, EPac Corals 1982/82 El Nino: V, EPac Corals 1982/83 El Nino: I |
species_code |
Fish surveys 1999-2015 |
Fish surveys, 1999-2015 |
Larval Dispersal in Kelp Rockfish |
classcode |
Florida Keys coral growth |
FKRT coral core data |
Thermal History and Coral Growth |
species |
Fossil Seal Amino Acid Isotopes |
C and N isotope data for individual amino acids from fossil seals from the western Ross Sea, Antarctica |
Southern Ocean Pinnipeds |
WoRMS_LSID, AphiaID |
Fossil Seal Bulk Isotopes 14C |
Location, weathering, bulk isotope, and 14C data for fossil seals from the western Ross Sea, Antarctica |
Southern Ocean Pinnipeds |
Taxon_field, Taxon_aDNA, Taxon_final |
Gill Net Catch Data |
|
Texas Coastal Fish |
Species_Code |
grouper-goby lab expt |
Lab experiments to determine if groupers (Cephalopholis sp.) eat cleaner gobies (Elacatinus sp.). |
Lionfish Invasion |
goby1_species_code, goby2_species_code |
Hydrothermal vent parasite species reported in published literature |
Literature review of deep-sea hydrothermal vent parasite, egg predator, and micropredator species |
EPR Functional Diversity |
PARASITE_SPECIES_AphiaID, PARASITE_SPECIES_LSID, HOST_SPECIES_AphiaID, HOST_SPECIES_LSID |
Identity and Heights of Octocoral Species |
|
Octocoral Community Dynamics |
Species_code |
IntertidaI Transitions |
IntertidaI Transitions |
Experiments with an Exploited Kelp, Neutral Theory of Biodiversity, Regenerated Nitrogen, LTREB Ecological Dynamics |
taxon_code |
IntertidaI Transitions Mussel Removals |
IntertidaI Transitions Mussel Removals |
Experiments with an Exploited Kelp, Neutral Theory of Biodiversity, Regenerated Nitrogen, LTREB Ecological Dynamics |
taxon_code |
inverts - pooled |
Benthic invertebrates from 6 sites pooled, USVI: 1992-2007 |
St. John LTREB |
M, AC, N, AD, O, P, A, Q, B, R, C, S, D, T, E, U, F, V, G, W, H, X, I, Y, J, Z, K, AA, L, AB |
inverts - Tektite and Yawzi Pt |
Benthic invertebrates from Tektite site, USVI: 1988-2007 |
St. John LTREB |
O, P, A, Q, R, B, S, C, T, D, U, E, V, F, W, G, X, H, Y, I, Z, J, AA, K, AB, L, AC, M, AD, N |
Juvenile oyster expt: non-oyster counts and sizes |
Juvenile oyster expt: non-oyster spp. counts and sizes |
Oyster Reef Reversal |
species_code |
Larvae collected near Mariana Back-Arc hydrothermal vents in 2010 |
Larvae collected near Mariana Back-Arc hydrothermal vents in 2010 |
Mariana Back-arc Vents |
LSID |
lionfish cleaner bottle expt |
Cleaner and host species observed on Bahamian reefs under varying experimental conditions |
Lionfish Invasion |
species_code_client, species_code_cleaner1, species_code_cleaner2, species_code_cleaner3 |
lionfish density effect on behavior |
Lionfish behavior observed during study of effect of density on lionfish behavior. |
Lionfish Invasion |
prey_species_struck, prey_species_blew, prey_species_killed |
lionfish density effects on native fish |
Experiment testing for the effects of lionfish density on native fishes. |
Lionfish Invasion |
species_code |
lionfish-goby lab expt |
Lab experiments to determine if lionfish (Pterois volitans) eat cleaner gobies (Elacatinus sp.). |
Lionfish Invasion |
goby1_species_code, goby2_species_code |
Macroalgal carbon and nitrogen content |
|
High latitude kelp dynamics |
Sp |
Macroalgal growth and loss: plant retention |
|
High latitude kelp dynamics |
Sp |
Macroalgal growth and loss: understory blade growth |
|
High latitude kelp dynamics |
Sp |
Macroalgal production rates |
|
High latitude kelp dynamics |
Sp |
Mariana Back-arc Macrofauna 2014 |
Macrofauna collected on colonization panels at Snail Vent Field on the Mariana Back-arc in 2014 |
Mariana Back-arc Vents |
scientificNameID |
Mark Recapture |
Mark recapture data for introduced crab in Seadrift Lagoon 2011-2018 |
Invasive_predator_harvest |
species_code |
MBRS coral survey 2014 |
MBRS coral survey |
Thermal History and Coral Growth |
spp_code |
MBRS Symbiodinium OTU |
Symbiodinium OTU |
Thermal History and Coral Growth |
species_code |
McMurdo epifauna species list |
|
McMurdo Predator Prey, Antarctic Benthic Recovery, McMurdo Marine Benthos, SCINI |
AphiaID |
MOC zoop AK-LTOP |
AK-LTOP MOCNESS tow zooplankton abundance/biomass |
NEP |
NODC_code |
MOC1 zoop abund |
MOCNESS-1 Plankton Abundances |
NEP |
nodc_code |
Modeled thermal traits |
PFT Thermal Response - Modeled thermal traits |
Phytoplankton Community Responses |
isolate_code |
Modern Seal Amino Acid Isotopes |
N isotope data for individual amino acids from modern west Antarctic seals |
Southern Ocean Pinnipeds |
WoRMS_LSID, AphiaID |
Modern Seal Bulk Isotopes |
C and N isotope data for seal tissues from west Antarctica |
Southern Ocean Pinnipeds |
WoRMS_LSID, AphiaID |
Montagna-783256-BenthosSpecies |
macrofauna species abundance |
Hurricane Harvey Texas Lagoons |
species_code |
Monthly Trapping |
Demographic data from introduced crab in Seadrift Lagoon 2009-2019 |
Invasive_predator_harvest |
species_code |
Neocalanus Multinet |
|
Neocalanus Gulf of Alaska |
APHIAID |
NWACS CAMEO Database - Species |
Species metadata associated with the NWACS CAMEO database |
NW_AtlEcosysConnect |
ITIS_num |
OA and temp expt. - coral growth |
OA and temp expt. - coral growth |
Thermal History and Coral Growth |
species_code |
OA and temp expt. - survival |
|
Thermal History and Coral Growth |
species_code |
Octocoral species abundances 2018 |
Octocoral species abundances 2018 |
Octocoral Community Dynamics |
Species_code |
Octocoral transects - species list |
Octocoral species list |
VI Octocorals, St. John LTREB |
field_code |
OTU table for 18S rRNA gene tag sequences from DNA and RNA |
|
SPOT |
OTU_ID |
PAM fluorescence |
Underwater fluorescence, Guam reefs 2014 |
Reef Resilience in Guam |
taxon_code |
Parasite taxonomic and life cycle information |
Literature review metazoan parasite species |
EPR Functional Diversity |
PARASITE_SPECIES_NAME_AphiaID, PARASITE_SPECIES_NAME_LSID |
phytoplankton taxonomy |
CARIACO time series Phytoplankton taxonomy from samples collected during CTD/Niskin casts |
CARIACO |
AphiaID |
Plant biomass and foliar standing crop |
|
High latitude kelp dynamics |
Sp |
Post-COVID Galapagos Megafauna Sizes |
Body sizes of megafauna species at 6 sites after the 2020 COVID lockdown in Galapagos Islands |
Galapagos diver disturbance |
Species_Code |
predator surveys Eleuthera |
Size of predators observed during dedicated reef predator searches at Eleuthera, Bahamas. |
Lionfish Invasion |
species_code |
predator surveys LSI |
Predators observed at reefs near Lee Stocking Island, Bahamas |
Lionfish Invasion |
species_code |
ProteOMZ Exclusive Peptide Level Spectral Counts |
|
ProteOMZ (Proteomics in an Oxygen Minimum Zone), MM Saito |
LCA_taxon |
Radiolabeled DOC kinetic and pulse-chase experiments |
Results for radiolabeled acetate, mannitol, and glycerol kinetic uptake and pulse-chase experiments for the species Cruciplacolithus neohelis |
Cocco-Mix |
CCMP_code |
Raman Spectra of Bivalve Larvae |
Raman spectra from several different bivalve species. |
Raman Spec Bivalves |
species_code |
Reciprocal transplant expt. - ecological survey |
Reciprocal transplant expt. - ecological survey, 2017 |
Varadero Reef |
taxon_code |
Reef biogeochemistry, metabolomics, and metagenomics |
Reef biogeochemistry, metabolomics, and metagenomics |
Coral Exometabolomes |
coral |
reef fish surveys |
Results of fish surveys on experimental reefs at Lee Stocking Island, Bahamas. |
Lionfish Invasion |
species_code |
Richness of experimental marine invertebrate communities across latitude |
|
Competition and Predation across Latitude |
Morph_taxa_num |
Richness of marine invertebrate communities across latitude with exposure to predation |
|
Competition and Predation across Latitude |
Taxa_num |
Seagrass fauna traits |
|
Habitat Fragmentation |
AphiaID |
SECM fish catch |
Fish catch data 1997-2006 in Southeastern Alaska |
NEP |
species_code |
Southern Ocean foraminifer N isotopes |
Planktic foraminifer tissue and shell d15N from net tows in the African sector |
N Isotopes Foraminifera, stable isotope instrumentation, Diatom-bound_N_Isotopes |
species |
species list |
Names, codes, and characteristics of species observed during reef surveys in the Bahamas. |
Lionfish Invasion |
species_code |
Species list |
List of coral species with codes: Guam 2014 |
Reef Resilience in Guam |
taxon_code |
St John Octocoral Abundances 2019 |
Octocoral colony heights measured during transect surveys at four sites on the south shore of St. John, US Virgin Islands in June-October 2019 |
Octocoral Community Dynamics |
Species_code |
Suppl 2c: microbial sample metadata |
Microbial sample metadata, sequencing and treatment details, temperature and salinity |
HERBVRE |
host_taxon_abbreviation |
Survey disease oysters |
Survey disease status and sizes |
Oyster Reef Reversal |
species |
Survey Quadrats: organism sizes |
Survey counts and sizes |
Oyster Reef Reversal |
species |
Synechococcus accessions |
Synechococcus accessions |
Phytoplankton Community Responses |
Tax_ID, Isolate |
Synechococcus growth rates |
Synechococcus growth rates |
Phytoplankton Community Responses |
Isolate |
Synechococcus TPC parameters |
Synechococcus thermal niche calcs |
Phytoplankton Community Responses |
Isolate |
Thermal capacities |
PFT Thermal Response - Thermal capacities |
Phytoplankton Community Responses |
isolate_code |
Thermal growth rates |
PFT Thermal Response - Thermal growth rates |
Phytoplankton Community Responses |
isolate_code |
Trawl survey: species list |
Species list |
PelagicHypoxia |
AphiaID |
Vent Parasite Dissection Data |
Species dissection rom the 9°50’N deep-sea hydrothermal vent field. |
EPR Functional Diversity |
HOST_SPECIES_AphiaID, HOST_SPECIES_LSID, PARASITE_SPECIES_NAME_AphiaID, PARASITE_SPECIES_NAME_LSID |
Vent_CSP_SAG |
Single amplified genomes (SAGs) of microbial cells isolated from Crab Spa, East Pacific Rise |
Microbial Communities at Deep-Sea Vents |
taxon_oid |
Vertical Plankton Tow - VPT |
Vertical Plankton Tow (VPT) data from 1997 - 2003 |
NEP |
nodc_code |
West Antarctic Isoscape Data |
C and N isotope data for zoo- and phytoplankton from west Antarctica |
Southern Ocean Pinnipeds |
WoRMS_LSID, AphiaID |
zoo_cb_meter_bongo |
Zooplankton meter3 counts from GSO/URI - Bongo Nets only |
GB |
taxon_code |
zoo_cb_meter_moc |
Zooplankton meter3 count data from GSO/URI - MOCNESS 1m2 only |
GB |
taxon_code |
zoo_cb_meter_pump |
Zooplankton meter3 counts from GSO/URI - Pump data only |
GB |
taxon_code |
zoo_sq_meter_bongo |
Zooplankton meter2 counts from GSO/URI - Bongo Nets only |
GB |
taxon_code |
zoo_sq_meter_moc |
Zooplankton meter2 count from GSO/URI - 1m2 MOCNESS nets only |
GB |
taxon_code |
zoo_sq_meter_pump |
Zooplankton meter2 counts from GSO/URI - Pump data only |
GB |
taxon_code |