Phytoplankton growth rates and microzooplankton grazing from R/V Alpha Helix HX242, HX244, HX247, HX271, HX275 in the Northeast Pacific from 2001-2003

Website: https://www.bco-dmo.org/dataset/2475
Data Type: Cruise Results
Version: 1
Version Date: 2007-03-28

Project
» U.S. GLOBEC Northeast Pacific (NEP)

Program
» U.S. GLOBal ocean ECosystems dynamics (U.S. GLOBEC)
ContributorsAffiliationRole
Strom, SuzanneWestern Washington University (WWU)Principal Investigator
Batchelder, HalOregon State University (OSU-CEOAS)Data Manager
Allison, DickyWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager
Copley, NancyWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager
Rauch, ShannonWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager

Abstract
Phytoplankton growth rates and microzooplankton grazing from R/V Alpha Helix HX242, HX244, HX247, HX271, HX275 in the Northeast Pacific from 2001-2003


Coverage

Spatial Extent: N:60.535 E:-146.607 S:58.097 W:-150.419
Temporal Extent: 2001-04-17 - 2003-08-09

Dataset Description

Phytoplankton Growth Rates in the coastal Gulf of Alaska

Phytoplankton growth rates, the phytoplankton growth rate response to nutrient enrichment, and microzooplankton grazing rates on phytoplankton in three different size classes were measured during three cruises to the coastal Gulf of Alaska in 2001.


Methods & Sampling

[excerpted from Strom, et al. (2006) Microzooplankton grazing in the coastal Gulf of Alaska: Variations in top-down control of phytoplankton. Limnol Oceanogr in press.]

Water drawn from multiple Niskin bottles closed at a single depth was pooled into two 25-liter polycarbonate carboys. Most often, water was collected from the depth corresponding to 50% of surface irradiance (50% Io, 3 to 10 m). Once during April, and once per station during July, water was collected from the depth of the subsurface chlorophyll maximum (SCM, 12 to 25 m). The contents of one carboy were gravity-filtered (0.2 um) to generate particle-free filtered seawater (FSW, the diluent for the dilution series). The contents of the other were gently pre-screened through 200 um Nitex mesh to exclude macrozooplankton (WSW, the whole seawater for the dilution series). Using gentle siphoning and mixing techniques, FSW and WSW were combined in known proportions in 2.35-liter polycarbonate bottles to generate a dilution series consisting of 9, 16, 24, 41, 61, and 100% WSW (each in duplicate). An additional pair of bottles diluted to 4% was added during the May and July cruises, as well as an additional pair of 100% WSW bottles to control for the effects of nutrient enrichment on phytoplankton growth rate. Clean techniques and inert materials (silicone, polycarbonate) were used throughout.


Data Processing Description

Initial samples for size-fractionated chlorophyll (<5, 5 to 20, and >20 um, in quadruplicate), nutrients (nitrate, nitrite, silicic acid, phosphate), and microzooplankton abundance and composition (in duplicate, see below) were taken from the WSW carboy at intervals during experiment set-up. Initial chlorophyll levels in diluted bottles were calculated from these measured WSW values and known dilution factors. Coefficients of variation for quadruplicate initial chlorophyll samples averaged 7.9%, 13.5%, and 8.9% for the <5, 5 to 20, and >20 um size fractions, respectively. During May (all but outer shelf experiments) and July cruises, all diluted bottles and two 100% WSW bottles were enriched with nitrate (4.7 umol L-1 as NaNO3) and phosphate (0.27 umol L-1 as Na2HPO4). The other two 100% WSW bottles were left unenriched. Bottles were screened to collection-depth light levels with neutral density screening and incubated on deck in seawater-cooled incubators for 24 hr. All bottles were then sampled in duplicate for size-fractionated chlorophyll (filtration volumes ranged from 0.15 to 1.08 liter depending on WSW chlorophyll and dilution levels); 100% WSW bottles were additionally sampled for microzooplankton abundance and composition.

Net growth rates (k, d-1) for total chlorophyll and individual chlorophyll size fractions were calculated as (1/t)(ln[Pt/Po]), where Pt = final chlorophyll concentration, Po = initial chlorophyll concentration, and t = incubation time in d. Intrinsic growth rates (µ,d-1) of phytoplankton were estimated from the y-intercept of net growth rates regressed upon fraction WSW. For experiments exhibiting saturated grazing (i.e. a leveling of net growth rate across the least-dilute bottles) (Gallegos 1989), instrinsic growth rate estimates were based on regression of net growth rates in only the most dilute bottles (generally those with <40% WSW). Microzooplankton grazing rates (g, d-1) were estimated from the slope of the regression for experiments with linear relationships between net growth and fraction WSW, and as g = µn - kn (where kn = net growth rate of phytoplankton in enriched, 100% WSW bottles) for experiments with saturated grazing. In experiments with nutrient enrichment, unenriched phytoplankton growth rates (µo) were calculated as µo = ko + g, where ko = net growth rate of phytoplankton in unenriched, 100% WSW bottles. Estimates of µo were used to compare microzooplankton grazing to phytoplankton growth in situ (g : µo). These ratios represent the fraction of primary production consumed each day by microzooplankton grazing. Ratios were arctan transformed for estimation of means and standard deviations.

More detailed methods reference in Strom, et al. (2006).


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Data Files

File
phyto_growth.csv
(Comma Separated Values (.csv), 24.11 KB)
MD5:bc87c1da92a74895c867a67a0c30acc3
Primary data file for dataset ID 2475

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Related Publications

Strom, S., Olson, M., Macri, E., & Mord, C. (2006). Cross-shelf gradients in phytoplankton community structure, nutrient utilization, and growth rate in the coastal Gulf of Alaska. Marine Ecology Progress Series, 328, 75–92. doi:10.3354/meps328075
Methods

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Parameters

ParameterDescriptionUnits
cruiseid

Cruise ID.

text
expt

Experiment number.

dimensionless
date_local

Day-month-year.

dd-mon-yy
station_std

standard station number

dimensionless
lat

Latitude

decimal degrees (North is positive)
lon

Longitude

decimal degrees (East is positive)
time_start_local

experiment start time

24-hour clock
depth

water collection depth

meters
chla_start_gt20um

initial chlorophyll concentration
for dilutions experiments

micrograms/liter
chla_start_5_to_20um

initial chlorophyll concentration
for dilutions experiments

micrograms/liter
chla_start_lt5um

initial chlorophyll concentration
for dilutions experiments

micrograms/liter
chla_start_total

sum of three size fractions

micrograms/liter
fed_phyto_growth_gt20um

enriched (addition of nitrate and phosphate)
phytoplankton growth rate

per day
fed_phyto_growth_5_to_20um

enriched (addition of nitrate and phosphate)
phytoplankton growth rate

per day
fed_phyto_growth_lt5um

enriched (addition of nitrate and phosphate)
phytoplankton growth rate

per day
fed_phyto_growth_total

sum of three size fractions

per day
fed_phyto_growth_std_err_gt20um

enriched phytoplankton growth rate standard error

per day
fed_phyto_growth_std_err_5_to_20um

enriched phytoplankton growth rate standard error

per day
fed_phyto_growth_std_err_lt5um

enriched phytoplankton growth rate standard error

per day
fed_phyto_growth_std_err_total

total standard error

per day
unfed_phyto_growth_gt20um

unenriched phytoplankton growth rate

per day
unfed_phyto_growth_5_to_20um

unenriched phytoplankton growth rate

per day
unfed_phyto_growth_lt5um

unenriched phytoplankton growth rate

per day
unfed_phyto_growth_total

sum of three size fractions

per day
unfed_phyto_growth_std_err_gt20um

unenriched phytoplankton growth rate standard error

per day
unfed_phyto_growth_std_err_5_to_20um

unenriched phytoplankton growth rate standard error

per day
unfed_phyto_growth_std_err_lt5um

unenriched phytoplankton growth rate standard error

per day
unfed_phyto_growth_std_err_total

total standard error

per day
microzoo_graz_gt20um

microzooplankton grazing rate
for >20µ size fraction

per day
microzoo_graz_5_to_20um

microzooplankton grazing rate
for >5 and <20µ size fraction

per day
microzoo_graz_lt5um

microzooplankton grazing rate
for <5µ size fraction

per day
microzoo_graz_total

total microzooplankton grazing rate for all size fractions

per day
microzoo_graz_std_err_gt20um

standard error

per day
microzoo_graz_std_err_5_to_20um

standard error

per day
microzoo_graz_std_err_lt5um

standard error

per day
microzoo_graz_std_err_total

total standard error

per day
temp

temperature at sample depth

degrees Celsius
sal

dalinity at sample depth

Practical Salinity Units (PSU)
irradiance_mol_per_m2

irradiance at sample depth

mol photons/meter^2(per second?)


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Instruments

Dataset-specific Instrument Name
Niskin Bottle
Generic Instrument Name
Niskin bottle
Dataset-specific Description
Niskin bottle cast, use Bottle_Niskin
Generic Instrument Description
A Niskin bottle (a next generation water sampler based on the Nansen bottle) is a cylindrical, non-metallic water collection device with stoppers at both ends. The bottles can be attached individually on a hydrowire or deployed in 12, 24, or 36 bottle Rosette systems mounted on a frame and combined with a CTD. Niskin bottles are used to collect discrete water samples for a range of measurements including pigments, nutrients, plankton, etc.


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Deployments

HX242

Website
Platform
R/V Alpha Helix
Report
Start Date
2001-04-17
End Date
2001-05-01
Description
Original cruise data are available from the NSF R2R data catalog

Methods & Sampling
[excerpted from Strom, et al. (2006) Microzooplankton grazing in the coastal Gulf of Alaska: Variations in top-down control of phytoplankton. Limnol Oceanogr in press.] Water drawn from multiple Niskin bottles closed at a single depth was pooled into two 25-liter polycarbonate carboys. Most often, water was collected from the depth corresponding to 50% of surface irradiance (50% Io, 3 to 10 m). Once during April, and once per station during July, water was collected from the depth of the subsurface chlorophyll maximum (SCM, 12 to 25 m). The contents of one carboy were gravity-filtered (0.2 µm) to generate particle-free filtered seawater (FSW, the diluent for the dilution series). The contents of the other were gently pre-screened through 200 µm Nitex mesh to exclude macrozooplankton (WSW, the whole seawater for the dilution series). Using gentle siphoning and mixing techniques, FSW and WSW were combined in known proportions in 2.35-liter polycarbonate bottles to generate a dilution series consisting of 9, 16, 24, 41, 61, and 100% WSW (each in duplicate). An additional pair of bottles diluted to 4% was added during the May and July cruises, as well as an additional pair of 100% WSW bottles to control for the effects of nutrient enrichment on phytoplankton growth rate. Clean techniques and inert materials (silicone, polycarbonate) were used throughout.

Processing Description
Initial samples for size-fractionated chlorophyll (20 µm, in quadruplicate), nutrients (nitrate, nitrite, silicic acid, phosphate), and microzooplankton abundance and composition (in duplicate, see below) were taken from the WSW carboy at intervals during experiment set-up. Initial chlorophyll levels in diluted bottles were calculated from these measured WSW values and known dilution factors. Coefficients of variation for quadruplicate initial chlorophyll samples averaged 7.9%, 13.5%, and 8.9% for the 20 µm size fractions, respectively. During May (all but outer shelf experiments) and July cruises, all diluted bottles and two 100% WSW bottles were enriched with nitrate (4.7 µmol L-1 as NaNO3) and phosphate (0.27 µmol L-1 as Na2HPO4). The other two 100% WSW bottles were left unenriched. Bottles were screened to collection-depth light levels with neutral density screening and incubated on deck in seawater-cooled incubators for 24 hr. All bottles were then sampled in duplicate for size-fractionated chlorophyll (filtration volumes ranged from 0.15 to 1.08 liter depending on WSW chlorophyll and dilution levels); 100% WSW bottles were additionally sampled for microzooplankton abundance and composition. Net growth rates (k, d-1) for total chlorophyll and individual chlorophyll size fractions were calculated as (1/t)(ln[Pt/Po]), where Pt = final chlorophyll concentration, Po = initial chlorophyll concentration, and t = incubation time in d. Intrinsic growth rates (µ,d-1) of phytoplankton were estimated from the y-intercept of net growth rates regressed upon fraction WSW. For experiments exhibiting saturated grazing (i.e. a leveling of net growth rate across the least-dilute bottles) (Gallegos 1989), instrinsic growth rate estimates were based on regression of net growth rates in only the most dilute bottles (generally those with ?40% WSW). Microzooplankton grazing rates (g, d-1) were estimated from the slope of the regression for experiments with linear relationships between net growth and fraction WSW, and as g = µn - kn (where kn = net growth rate of phytoplankton in enriched, 100% WSW bottles) for experiments with saturated grazing. In experiments with nutrient enrichment, unenriched phytoplankton growth rates (µo) were calculated as µo = ko + g, where ko = net growth rate of phytoplankton in unenriched, 100% WSW bottles. Estimates of µo were used to compare microzooplankton grazing to phytoplankton growth in situ (g : µo). These ratios represent the fraction of primary production consumed each day by microzooplankton grazing. Ratios were arctan transformed for estimation of means and standard deviations. More detailed methods reference: Strom, et al. (2006) Cross-shelf gradients in phytoplankton community structure, nutrient utilization, and growth rate in the coastal Gulf of Alaska. Marine Ecology Progress Series (in press)

HX244

Website
Platform
R/V Alpha Helix
Report
Start Date
2001-05-17
End Date
2001-05-31
Description
Original cruise data are available from the NSF R2R data catalog

Methods & Sampling
[excerpted from Strom, et al. (2006) Microzooplankton grazing in the coastal Gulf of Alaska: Variations in top-down control of phytoplankton. Limnol Oceanogr in press.] Water drawn from multiple Niskin bottles closed at a single depth was pooled into two 25-liter polycarbonate carboys. Most often, water was collected from the depth corresponding to 50% of surface irradiance (50% Io, 3 to 10 m). Once during April, and once per station during July, water was collected from the depth of the subsurface chlorophyll maximum (SCM, 12 to 25 m). The contents of one carboy were gravity-filtered (0.2 µm) to generate particle-free filtered seawater (FSW, the diluent for the dilution series). The contents of the other were gently pre-screened through 200 µm Nitex mesh to exclude macrozooplankton (WSW, the whole seawater for the dilution series). Using gentle siphoning and mixing techniques, FSW and WSW were combined in known proportions in 2.35-liter polycarbonate bottles to generate a dilution series consisting of 9, 16, 24, 41, 61, and 100% WSW (each in duplicate). An additional pair of bottles diluted to 4% was added during the May and July cruises, as well as an additional pair of 100% WSW bottles to control for the effects of nutrient enrichment on phytoplankton growth rate. Clean techniques and inert materials (silicone, polycarbonate) were used throughout.

Processing Description
Initial samples for size-fractionated chlorophyll (20 µm, in quadruplicate), nutrients (nitrate, nitrite, silicic acid, phosphate), and microzooplankton abundance and composition (in duplicate, see below) were taken from the WSW carboy at intervals during experiment set-up. Initial chlorophyll levels in diluted bottles were calculated from these measured WSW values and known dilution factors. Coefficients of variation for quadruplicate initial chlorophyll samples averaged 7.9%, 13.5%, and 8.9% for the 20 µm size fractions, respectively. During May (all but outer shelf experiments) and July cruises, all diluted bottles and two 100% WSW bottles were enriched with nitrate (4.7 µmol L-1 as NaNO3) and phosphate (0.27 µmol L-1 as Na2HPO4). The other two 100% WSW bottles were left unenriched. Bottles were screened to collection-depth light levels with neutral density screening and incubated on deck in seawater-cooled incubators for 24 hr. All bottles were then sampled in duplicate for size-fractionated chlorophyll (filtration volumes ranged from 0.15 to 1.08 liter depending on WSW chlorophyll and dilution levels); 100% WSW bottles were additionally sampled for microzooplankton abundance and composition. Net growth rates (k, d-1) for total chlorophyll and individual chlorophyll size fractions were calculated as (1/t)(ln[Pt/Po]), where Pt = final chlorophyll concentration, Po = initial chlorophyll concentration, and t = incubation time in d. Intrinsic growth rates (µ,d-1) of phytoplankton were estimated from the y-intercept of net growth rates regressed upon fraction WSW. For experiments exhibiting saturated grazing (i.e. a leveling of net growth rate across the least-dilute bottles) (Gallegos 1989), instrinsic growth rate estimates were based on regression of net growth rates in only the most dilute bottles (generally those with ?40% WSW). Microzooplankton grazing rates (g, d-1) were estimated from the slope of the regression for experiments with linear relationships between net growth and fraction WSW, and as g = µn - kn (where kn = net growth rate of phytoplankton in enriched, 100% WSW bottles) for experiments with saturated grazing. In experiments with nutrient enrichment, unenriched phytoplankton growth rates (µo) were calculated as µo = ko + g, where ko = net growth rate of phytoplankton in unenriched, 100% WSW bottles. Estimates of µo were used to compare microzooplankton grazing to phytoplankton growth in situ (g : µo). These ratios represent the fraction of primary production consumed each day by microzooplankton grazing. Ratios were arctan transformed for estimation of means and standard deviations. More detailed methods reference: Strom, et al. (2006) Cross-shelf gradients in phytoplankton community structure, nutrient utilization, and growth rate in the coastal Gulf of Alaska. Marine Ecology Progress Series (in press)

HX247

Website
Platform
R/V Alpha Helix
Report
Start Date
2001-07-12
End Date
2001-07-26
Description
Original cruise data are available from the NSF R2R data catalog

Methods & Sampling
[excerpted from Strom, et al. (2006) Microzooplankton grazing in the coastal Gulf of Alaska: Variations in top-down control of phytoplankton. Limnol Oceanogr in press.] Water drawn from multiple Niskin bottles closed at a single depth was pooled into two 25-liter polycarbonate carboys. Most often, water was collected from the depth corresponding to 50% of surface irradiance (50% Io, 3 to 10 m). Once during April, and once per station during July, water was collected from the depth of the subsurface chlorophyll maximum (SCM, 12 to 25 m). The contents of one carboy were gravity-filtered (0.2 µm) to generate particle-free filtered seawater (FSW, the diluent for the dilution series). The contents of the other were gently pre-screened through 200 µm Nitex mesh to exclude macrozooplankton (WSW, the whole seawater for the dilution series). Using gentle siphoning and mixing techniques, FSW and WSW were combined in known proportions in 2.35-liter polycarbonate bottles to generate a dilution series consisting of 9, 16, 24, 41, 61, and 100% WSW (each in duplicate). An additional pair of bottles diluted to 4% was added during the May and July cruises, as well as an additional pair of 100% WSW bottles to control for the effects of nutrient enrichment on phytoplankton growth rate. Clean techniques and inert materials (silicone, polycarbonate) were used throughout.

Processing Description
Initial samples for size-fractionated chlorophyll (20 µm, in quadruplicate), nutrients (nitrate, nitrite, silicic acid, phosphate), and microzooplankton abundance and composition (in duplicate, see below) were taken from the WSW carboy at intervals during experiment set-up. Initial chlorophyll levels in diluted bottles were calculated from these measured WSW values and known dilution factors. Coefficients of variation for quadruplicate initial chlorophyll samples averaged 7.9%, 13.5%, and 8.9% for the 20 µm size fractions, respectively. During May (all but outer shelf experiments) and July cruises, all diluted bottles and two 100% WSW bottles were enriched with nitrate (4.7 µmol L-1 as NaNO3) and phosphate (0.27 µmol L-1 as Na2HPO4). The other two 100% WSW bottles were left unenriched. Bottles were screened to collection-depth light levels with neutral density screening and incubated on deck in seawater-cooled incubators for 24 hr. All bottles were then sampled in duplicate for size-fractionated chlorophyll (filtration volumes ranged from 0.15 to 1.08 liter depending on WSW chlorophyll and dilution levels); 100% WSW bottles were additionally sampled for microzooplankton abundance and composition. Net growth rates (k, d-1) for total chlorophyll and individual chlorophyll size fractions were calculated as (1/t)(ln[Pt/Po]), where Pt = final chlorophyll concentration, Po = initial chlorophyll concentration, and t = incubation time in d. Intrinsic growth rates (µ,d-1) of phytoplankton were estimated from the y-intercept of net growth rates regressed upon fraction WSW. For experiments exhibiting saturated grazing (i.e. a leveling of net growth rate across the least-dilute bottles) (Gallegos 1989), instrinsic growth rate estimates were based on regression of net growth rates in only the most dilute bottles (generally those with ?40% WSW). Microzooplankton grazing rates (g, d-1) were estimated from the slope of the regression for experiments with linear relationships between net growth and fraction WSW, and as g = µn - kn (where kn = net growth rate of phytoplankton in enriched, 100% WSW bottles) for experiments with saturated grazing. In experiments with nutrient enrichment, unenriched phytoplankton growth rates (µo) were calculated as µo = ko + g, where ko = net growth rate of phytoplankton in unenriched, 100% WSW bottles. Estimates of µo were used to compare microzooplankton grazing to phytoplankton growth in situ (g : µo). These ratios represent the fraction of primary production consumed each day by microzooplankton grazing. Ratios were arctan transformed for estimation of means and standard deviations. More detailed methods reference: Strom, et al. (2006) Cross-shelf gradients in phytoplankton community structure, nutrient utilization, and growth rate in the coastal Gulf of Alaska. Marine Ecology Progress Series (in press)

HX271

Website
Platform
R/V Alpha Helix
Report
Start Date
2003-04-24
End Date
2003-05-15
Description
Original cruise data are available from the NSF R2R data catalog

HX275

Website
Platform
R/V Alpha Helix
Report
Start Date
2003-07-20
End Date
2003-08-12
Description
Original cruise data are available from the NSF R2R data catalog


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Project Information

U.S. GLOBEC Northeast Pacific (NEP)


Coverage: Northeast Pacific Ocean, Gulf of Alaska


Program in a Nutshell

Goal: To understand the effects of climate variability and climate change on the distribution, abundance and production of marine animals (including commercially important living marine resources) in the eastern North Pacific. To embody this understanding in diagnostic and prognostic ecosystem models, capable of capturing the ecosystem response to major climatic fluctuations.

Approach: To study the effects of past and present climate variability on the population ecology and population dynamics of marine biota and living marine resources, and to use this information as a proxy for how the ecosystems of the eastern North Pacific may respond to future global climate change. The strong temporal variability in the physical and biological signals of the NEP will be used to examine the biophysical mechanisms through which zooplankton and salmon populations respond to physical forcing and biological interactions in the coastal regions of the two gyres. Annual and interannual variability will be studied directly through long-term observations and detailed process studies; variability at longer time scales will be examined through retrospective analysis of directly measured and proxy data. Coupled biophysical models of the ecosystems of these regions will be developed and tested using the process studies and data collected from the long-term observation programs, then further tested and improved by hindcasting selected retrospective data series.



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Program Information

U.S. GLOBal ocean ECosystems dynamics (U.S. GLOBEC)


Coverage: Global


U.S. GLOBEC (GLOBal ocean ECosystems dynamics) is a research program organized by oceanographers and fisheries scientists to address the question of how global climate change may affect the abundance and production of animals in the sea.

The U.S. GLOBEC Program currently had major research efforts underway in the Georges Bank / Northwest Atlantic Region, and the Northeast Pacific (with components in the California Current and in the Coastal Gulf of Alaska). U.S. GLOBEC was a major contributor to International GLOBEC efforts in the Southern Ocean and Western Antarctic Peninsula (WAP).



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)
National Oceanic and Atmospheric Administration (NOAA)

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