Zooplankton counts for the Southeast Alaska Coastal Monitoring from R/V John N. Cobb SECM multiple cruises in the Gulf of Alaska, Coastal Southeast Alaska from 1997-2006 (NEP project)

Website: https://www.bco-dmo.org/dataset/3301
Version: 2010-02-18

Project
» U.S. GLOBEC Northeast Pacific (NEP)

Program
» U.S. GLOBal ocean ECosystems dynamics (U.S. GLOBEC)
ContributorsAffiliationRole
Fergusson, Emily A.National Oceanic and Atmospheric Administration - Alaska Fisheries Science Center (NOAA-AFSC-Auke)Co-Chief Scientist, Data Manager
Orsi, Joseph ANational Oceanic and Atmospheric Administration - Alaska Fisheries Science Center (NOAA-AFSC-Auke)Co-Chief Scientist, Lead Principal Investigator
Sturdevant, Molly V.National Oceanic and Atmospheric Administration - Alaska Fisheries Science Center (NOAA-AFSC-Auke)Co-Chief Scientist
Wertheimer, Alex C.National Oceanic and Atmospheric Administration - Alaska Fisheries Science Center (NOAA-AFSC-Auke)Lead Principal Investigator, Principal Investigator
Copley, NancyWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager


Dataset Description

Zooplankton counts from net tows taken in conjunction with juvenile salmon studies in the Gulf of Alaska from 1997-2006 by the Southeast Coastal Monitoring Project. Measurements include settling volume, displacement volume, composition of taxa.

important links:
http://www.afsc.noaa.gov/ABL/MSI/msi_secm.htm

Also see related SECM datasets:
station data
nutrients
ctd
fish catch data
fish length and stomach contents


Methods & Sampling

Surface (bucket) and 20-m (Niskin bottle) water samples were taken once at each station for later nutrient and chlorophyll analysis.

One shallow vertical haul (20-m) was made at each station (except three at ABM) with a 50-cm, 243-micron mesh NORPAC net. One deep vertical haul (to 200 m or within 10 m of bottom) was made at ABM and the Icy Point stations with a 57-cm, 202-micron mesh WP-2 net.

One double oblique bongo haul was made at stations along the Icy Strait and Lower Clarence Strait transects and at ABM to a depth of 200 m or within 20 m of the bottom, using a 60-cm diameter tandem frame with 505-micron and 333-micron mesh nets. A VEMCO ML-08-TDR time-depth recorder was used with the oblique bongo hauls to record the maximum sampling depth of each haul. General Oceanics model 2031 or Rigosha flow meters were placed inside the bongo and deep conical nets for calculation of filtered water volumes.

Zooplankton sampling: Zooplankton samples were concentrated and preserved in a 5% formalin-seawater solution. Zooplankton settled volumes (ZSV, ml) and total settled volumes (TSV, ml) of each 20-m vertical haul were measured after settling the samples for a 24-hr period in Imhof cones. Displacement volumes (DV, ml) of zooplankton were measured for bongo net samples (333-micron and 505-micron mesh). Samples were brought to a constant volume (500 ml) by adding water, and then were sieved through 243-micron mesh to separate the zooplankton from the liquid. The volume of decanted liquid was measured and subtracted from the sample starting volume to yield zooplankton DV.

Station Codes:

station locality
ABM Auke Bay Monitor
CS A-D Cross Sound
ED A-D Cape Edward
FPR False Point Retreat
IP A-D Icy Point
IS A-D Icy Strait
LC A-D Lower Clarence
LFC Lower Favorite Channel
MC A-D Middle Clarence
TK G-I Taku Inlet transect
UC A-D Upper Chatham Strait

Data Processing Description

Detailed zooplankton species composition was determined microscopically from subsamples obtained using a Folsom or Motoda splitter. Density was then estimated by multiplying the count in the subsample by the split fraction and dividing the expanded count by the volume filtered. Percent total composition was summarized by major taxa for region, habitat, and month. Species were pooled into taxonomic groups including small calanoid copepods (< 2.5 mm TL), large calanoid copepods (> 2.5 mm TL), barnacle larvae, euphausiids (principally larval and juvenile stages), oikopleurans (Larvacea), decapod (crab) larvae, amphipods (hyperiid and gammarid), gastropods (primarily pteropods), chaetognaths, and combined minor taxa.

Use constraints: User must read and fully comprehend the metadata prior to use. User must acknowledge the Originator when using the data set as a source. User must share data products developed using the source data set with the Originator. Data should not be used beyond the limits fo the source scale.

01 Oct 2012 - BCO-DMO separated original 'taxon' column into taxon, species, stage, and common_name.


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Data Files

File
secm_zoop.csv
(Comma Separated Values (.csv), 5.14 MB)
MD5:5b8c5bfcaaddc04d69900e7f766f020e
Primary data file for dataset ID 3301

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Parameters

ParameterDescriptionUnits
bottle

sample bottle number

integer
comments_sample

comments pertaining to the haul or bottle

text
comments_taxon

comments pertaining to the zooplankton

text
count

number of individuals counted in sample fraction

integer
day_local

day of month

integer
depth

maximum depth of net haul (off TDR if available; otherwise calculated from wire out)

meters
disp_vol_zoop

displacement volume

milliliters
fraction

split fraction

fraction
fraction_dec

split fraction as decimal

decimal number
haul_id

haul number

integer
inst

zooplankton net type (NORPAC; WP-2; BONGO)

text
lat

latitude of station, North is positive.

decimal degrees
lon

longitude of station; East is positive.

decimal degrees
mesh

zooplankton net mesh (243; 202; 333; 505)

microns
month_local

month of year

1-12
station

station code

text
sv_phyto

phytoplankton settled volume

milliliters
sv_total

total settled volume of sample

milliliters
sv_zoop

zooplankton settled volume

milliliters
time_local

time of day

local time
year

year of sampling

YYYY
yrday_local

local day and decimal time

as 326.5 for the 326th day of the year
region

Northern (NSE) or Southern (SSE) Southeast Alaska.

text
depth_w

depth of water at this site

meters
lat_haul

latitude at start of haul; North is positive

decimal degrees
lon_haul

longitude at start of haul, W is negative

decimal degrees
taxon

High-level taxonomic identification.

text
cruise_id

cruise identification: jc=John Cobb; next two numbers = year; last 2 numbers = cruise # ('x' means cruise # is not known)

text
species

Species name (or genus and species).

text
stage

Stage/sex/size.

text
common_name

Common name of the organism.

text


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Instruments

Dataset-specific Instrument Name
Bongo Nets
Generic Instrument Name
Bongo Net
Dataset-specific Description
60-cm diameter tandem frame with 505-µm and 333-µm mesh nets. A VEMCO ML-08-TDR time-depth recorder was used with the oblique bongo hauls to record the maximum sampling depth of each haul. General Oceanics model 2031 or Rigosha flow meters were placed inside the bongo and deep conical nets for calculation of filtered water volumes.
Generic Instrument Description
A Bongo Net consists of paired plankton nets, typically with a 60 cm diameter mouth opening and varying mesh sizes, 10 to 1000 micron. The Bongo Frame was designed by the National Marine Fisheries Service for use in the MARMAP program. It consists of two cylindrical collars connected with a yoke so that replicate samples are collected at the same time. Variations in models are designed for either vertical hauls (OI-2500 = NMFS Pairovet-Style, MARMAP Bongo, CalVET) or both oblique and vertical hauls (Aquatic Research). The OI-1200 has an opening and closing mechanism that allows discrete "known-depth" sampling. This model is large enough to filter water at the rate of 47.5 m3/minute when towing at a speed of two knots. More information: Ocean Instruments, Aquatic Research, Sea-Gear

Dataset-specific Instrument Name
CTD Seabird 19
Generic Instrument Name
CTD Sea-Bird SEACAT 19
Dataset-specific Description
The CTD data were collected with a Sea-Bird1 SBE 19 Seacat profiler to 200 m or within 10 m of the bottom.
Generic Instrument Description
The Sea-Bird SBE 19 SEACAT Recorder measures conductivity, temperature, and pressure (depth). The SEACAT is self-powered and self-contained and can be deployed in profiling or moored mode. The SBE 19 SEACAT was replaced in 2001 by the 19plus. more information from Sea-Bird Electronics

Dataset-specific Instrument Name
Niskin Bottle
Generic Instrument Name
Niskin bottle
Generic Instrument Description
A Niskin bottle (a next generation water sampler based on the Nansen bottle) is a cylindrical, non-metallic water collection device with stoppers at both ends. The bottles can be attached individually on a hydrowire or deployed in 12, 24, or 36 bottle Rosette systems mounted on a frame and combined with a CTD. Niskin bottles are used to collect discrete water samples for a range of measurements including pigments, nutrients, plankton, etc.

Dataset-specific Instrument Name
Radiometer
Generic Instrument Name
Radiometer
Dataset-specific Description
To quantify ambient light levels, light intensities (W* m-2) were recorded at each station with a Li-Cor Model 189 radiometer.
Generic Instrument Description
Radiometer is a generic term for a range of instruments used to measure electromagnetic radiation (radiance and irradiance) in the atmosphere or the water column. For example, this instrument category includes free-fall spectral radiometer (SPMR/SMSR System, Satlantic, Inc), profiling or deck cosine PAR units (PUV-500 and 510, Biospherical Instruments, Inc). This is a generic term used when specific type, make and model were not specified.

Dataset-specific Instrument Name
Thermosalinograph
Generic Instrument Name
Thermosalinograph
Dataset-specific Description
Surface (3-m) temperature and salinity data were collected at 1-minute intervals with an onboard thermosalinograph (Sea-Bird SBE 21).
Generic Instrument Description
A thermosalinograph (TSG) is used to obtain a continuous record of sea surface temperature and salinity. On many research vessels the TSG is integrated into the ship's underway seawater sampling system and reported with the underway or alongtrack data.


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Deployments

SECM

Website
Platform
R/V John N. Cobb
Report
Start Date
1997-05-20
End Date
2006-08-29
Description
Periodic salmon, zooplankton, nutrient sampling over a 10 year period. No cruise numbers are provided. The John N. Cobb is a 29-m research vessel with a main engine of 325 horsepower and a cruising speed of 10 knots.

jc0005

Website
Platform
R/V John N. Cobb
Report
Start Date
2000-05-19
End Date
2000-05-25
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0009

Website
Platform
R/V John N. Cobb
Report
Start Date
2000-06-26
End Date
2000-07-02
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0012

Website
Platform
R/V John N. Cobb
Report
Start Date
2000-07-19
End Date
2000-07-25
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0016

Website
Platform
R/V John N. Cobb
Report
Start Date
2000-08-25
End Date
2000-08-31
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0018

Website
Platform
R/V John N. Cobb
Report
Start Date
2000-09-25
End Date
2000-10-01
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0105

Website
Platform
R/V John N. Cobb
Report
Start Date
2001-05-19
End Date
2001-05-25
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0109

Website
Platform
R/V John N. Cobb
Report
Start Date
2001-06-26
End Date
2001-07-02
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0113

Website
Platform
R/V John N. Cobb
Report
Start Date
2001-07-27
End Date
2001-08-02
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0116

Website
Platform
R/V John N. Cobb
Report
Start Date
2001-08-26
End Date
2001-09-01
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0118

Website
Platform
R/V John N. Cobb
Report
Start Date
2001-09-26
End Date
2001-10-02
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0205

Website
Platform
R/V John N. Cobb
Report
Start Date
2002-05-21
End Date
2002-05-24
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0209

Website
Platform
R/V John N. Cobb
Report
Start Date
2002-06-22
End Date
2002-06-27
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0213

Website
Platform
R/V John N. Cobb
Report
Start Date
2002-07-23
End Date
2002-07-31
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0216

Website
Platform
R/V John N. Cobb
Report
Start Date
2002-08-23
End Date
2002-08-30
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0302

Website
Platform
R/V John N. Cobb
Report
Start Date
2003-05-20
End Date
2003-05-25
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0305

Website
Platform
R/V John N. Cobb
Report
Start Date
2003-06-21
End Date
2003-06-30
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0308

Website
Platform
R/V John N. Cobb
Report
Start Date
2003-07-22
End Date
2003-07-29
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0310

Website
Platform
R/V John N. Cobb
Report
Start Date
2003-08-08
End Date
2003-08-11
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0312

Website
Platform
R/V John N. Cobb
Report
Start Date
2003-08-21
End Date
2003-08-27
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0406

Website
Platform
R/V John N. Cobb
Report
Start Date
2004-05-18
End Date
2004-05-23
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0408

Website
Platform
R/V John N. Cobb
Report
Start Date
2004-06-20
End Date
2004-06-28
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0411

Website
Platform
R/V John N. Cobb
Report
Start Date
2004-07-23
End Date
2004-07-31
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0414

Website
Platform
R/V John N. Cobb
Report
Start Date
2004-08-21
End Date
2004-08-28
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0506

Website
Platform
R/V John N. Cobb
Report
Start Date
2005-05-22
End Date
2005-05-25
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0508

Website
Platform
R/V John N. Cobb
Report
Start Date
2005-06-20
End Date
2005-07-03
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0510

Website
Platform
R/V John N. Cobb
Report
Start Date
2005-07-20
End Date
2005-08-01
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0512

Website
Platform
R/V John N. Cobb
Report
Start Date
2005-08-23
End Date
2005-08-29
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0608

Website
Platform
R/V John N. Cobb
Report
Start Date
2006-05-22
End Date
2006-05-25
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0611

Website
Platform
R/V John N. Cobb
Report
Start Date
2006-06-21
End Date
2006-07-02
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0613

Website
Platform
R/V John N. Cobb
Report
Start Date
2006-07-21
End Date
2006-07-31
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0616

Website
Platform
R/V John N. Cobb
Report
Start Date
2006-08-19
End Date
2006-08-29
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc9706

Website
Platform
R/V John N. Cobb
Report
Start Date
1997-05-20
End Date
1997-05-26
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc9709

Website
Platform
R/V John N. Cobb
Report
Start Date
1997-06-22
End Date
1997-06-28
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc9711

Website
Platform
R/V John N. Cobb
Report
Start Date
1997-07-18
End Date
1997-07-27
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc9714

Website
Platform
R/V John N. Cobb
Report
Start Date
1997-08-22
End Date
1997-08-28
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc9717

Website
Platform
R/V John N. Cobb
Report
Start Date
1997-10-02
End Date
1997-10-07
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc9805

Website
Platform
R/V John N. Cobb
Start Date
1998-05-14
End Date
1998-05-18
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc9808

Website
Platform
R/V John N. Cobb
Report
Start Date
1998-06-24
End Date
1998-07-01
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc9811

Website
Platform
R/V John N. Cobb
Report
Start Date
1998-07-20
End Date
1998-07-28
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc9815

Website
Platform
R/V John N. Cobb
Report
Start Date
1998-08-24
End Date
1998-08-30
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc9818

Website
Platform
R/V John N. Cobb
Report
Start Date
1998-10-05
End Date
1998-10-09
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc9906

Website
Platform
R/V John N. Cobb
Report
Start Date
1999-05-20
End Date
1999-05-25
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc9909

Website
Platform
R/V John N. Cobb
Report
Start Date
1999-06-26
End Date
1999-07-01
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc9912

Website
Platform
R/V John N. Cobb
Report
Start Date
1999-07-24
End Date
1999-07-30
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc9915

Website
Platform
R/V John N. Cobb
Report
Start Date
1999-08-20
End Date
1999-08-26
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc9918

Website
Platform
R/V John N. Cobb
Report
Start Date
1999-09-26
End Date
1999-10-02
Description
Southeast Alaska Coastal Monitoring (SECM) cruise

jc0304b

Website
Platform
R/V John N. Cobb
Report
Start Date
2003-06-12
End Date
2003-06-15
Description
Southeast Alaska Coastal Monitoring (SECM) cruise


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Project Information

U.S. GLOBEC Northeast Pacific (NEP)


Coverage: Northeast Pacific Ocean, Gulf of Alaska


Program in a Nutshell

Goal: To understand the effects of climate variability and climate change on the distribution, abundance and production of marine animals (including commercially important living marine resources) in the eastern North Pacific. To embody this understanding in diagnostic and prognostic ecosystem models, capable of capturing the ecosystem response to major climatic fluctuations.

Approach: To study the effects of past and present climate variability on the population ecology and population dynamics of marine biota and living marine resources, and to use this information as a proxy for how the ecosystems of the eastern North Pacific may respond to future global climate change. The strong temporal variability in the physical and biological signals of the NEP will be used to examine the biophysical mechanisms through which zooplankton and salmon populations respond to physical forcing and biological interactions in the coastal regions of the two gyres. Annual and interannual variability will be studied directly through long-term observations and detailed process studies; variability at longer time scales will be examined through retrospective analysis of directly measured and proxy data. Coupled biophysical models of the ecosystems of these regions will be developed and tested using the process studies and data collected from the long-term observation programs, then further tested and improved by hindcasting selected retrospective data series.



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Program Information

U.S. GLOBal ocean ECosystems dynamics (U.S. GLOBEC)


Coverage: Global


U.S. GLOBEC (GLOBal ocean ECosystems dynamics) is a research program organized by oceanographers and fisheries scientists to address the question of how global climate change may affect the abundance and production of animals in the sea.

The U.S. GLOBEC Program currently had major research efforts underway in the Georges Bank / Northwest Atlantic Region, and the Northeast Pacific (with components in the California Current and in the Coastal Gulf of Alaska). U.S. GLOBEC was a major contributor to International GLOBEC efforts in the Southern Ocean and Western Antarctic Peninsula (WAP).



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)
National Oceanic and Atmospheric Administration (NOAA)

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