Contributors | Affiliation | Role |
---|---|---|
Fergusson, Emily A. | National Oceanic and Atmospheric Administration - Alaska Fisheries Science Center (NOAA-AFSC-Auke) | Co-Chief Scientist, Data Manager |
Orsi, Joseph A | National Oceanic and Atmospheric Administration - Alaska Fisheries Science Center (NOAA-AFSC-Auke) | Co-Chief Scientist, Lead Principal Investigator |
Sturdevant, Molly V. | National Oceanic and Atmospheric Administration - Alaska Fisheries Science Center (NOAA-AFSC-Auke) | Co-Chief Scientist |
Wertheimer, Alex C. | National Oceanic and Atmospheric Administration - Alaska Fisheries Science Center (NOAA-AFSC-Auke) | Lead Principal Investigator, Principal Investigator |
Copley, Nancy | Woods Hole Oceanographic Institution (WHOI BCO-DMO) | BCO-DMO Data Manager |
Zooplankton counts from net tows taken in conjunction with juvenile salmon studies in the Gulf of Alaska from 1997-2006 by the Southeast Coastal Monitoring Project. Measurements include settling volume, displacement volume, composition of taxa.
important links:
http://www.afsc.noaa.gov/ABL/MSI/msi_secm.htm
Also see related SECM datasets:
station data
nutrients
ctd
fish catch data
fish length and stomach contents
Surface (bucket) and 20-m (Niskin bottle) water samples were taken once at each station for later nutrient and chlorophyll analysis.
One shallow vertical haul (20-m) was made at each station (except three at ABM) with a 50-cm, 243-micron mesh NORPAC net. One deep vertical haul (to 200 m or within 10 m of bottom) was made at ABM and the Icy Point stations with a 57-cm, 202-micron mesh WP-2 net.
One double oblique bongo haul was made at stations along the Icy Strait and Lower Clarence Strait transects and at ABM to a depth of 200 m or within 20 m of the bottom, using a 60-cm diameter tandem frame with 505-micron and 333-micron mesh nets. A VEMCO ML-08-TDR time-depth recorder was used with the oblique bongo hauls to record the maximum sampling depth of each haul. General Oceanics model 2031 or Rigosha flow meters were placed inside the bongo and deep conical nets for calculation of filtered water volumes.
Zooplankton sampling: Zooplankton samples were concentrated and preserved in a 5% formalin-seawater solution. Zooplankton settled volumes (ZSV, ml) and total settled volumes (TSV, ml) of each 20-m vertical haul were measured after settling the samples for a 24-hr period in Imhof cones. Displacement volumes (DV, ml) of zooplankton were measured for bongo net samples (333-micron and 505-micron mesh). Samples were brought to a constant volume (500 ml) by adding water, and then were sieved through 243-micron mesh to separate the zooplankton from the liquid. The volume of decanted liquid was measured and subtracted from the sample starting volume to yield zooplankton DV.
Station Codes:
station | locality |
ABM | Auke Bay Monitor |
CS A-D | Cross Sound |
ED A-D | Cape Edward |
FPR | False Point Retreat |
IP A-D | Icy Point |
IS A-D | Icy Strait |
LC A-D | Lower Clarence |
LFC | Lower Favorite Channel |
MC A-D | Middle Clarence |
TK G-I | Taku Inlet transect |
UC A-D | Upper Chatham Strait |
Detailed zooplankton species composition was determined microscopically from subsamples obtained using a Folsom or Motoda splitter. Density was then estimated by multiplying the count in the subsample by the split fraction and dividing the expanded count by the volume filtered. Percent total composition was summarized by major taxa for region, habitat, and month. Species were pooled into taxonomic groups including small calanoid copepods (< 2.5 mm TL), large calanoid copepods (> 2.5 mm TL), barnacle larvae, euphausiids (principally larval and juvenile stages), oikopleurans (Larvacea), decapod (crab) larvae, amphipods (hyperiid and gammarid), gastropods (primarily pteropods), chaetognaths, and combined minor taxa.
Use constraints: User must read and fully comprehend the metadata prior to use. User must acknowledge the Originator when using the data set as a source. User must share data products developed using the source data set with the Originator. Data should not be used beyond the limits fo the source scale.
01 Oct 2012 - BCO-DMO separated original 'taxon' column into taxon, species, stage, and common_name.
File |
---|
secm_zoop.csv (Comma Separated Values (.csv), 5.14 MB) MD5:5b8c5bfcaaddc04d69900e7f766f020e Primary data file for dataset ID 3301 |
Parameter | Description | Units |
bottle | sample bottle number | integer |
comments_sample | comments pertaining to the haul or bottle | text |
comments_taxon | comments pertaining to the zooplankton | text |
count | number of individuals counted in sample fraction | integer |
day_local | day of month | integer |
depth | maximum depth of net haul (off TDR if available; otherwise calculated from wire out) | meters |
disp_vol_zoop | displacement volume | milliliters |
fraction | split fraction | fraction |
fraction_dec | split fraction as decimal | decimal number |
haul_id | haul number | integer |
inst | zooplankton net type (NORPAC; WP-2; BONGO) | text |
lat | latitude of station, North is positive. | decimal degrees |
lon | longitude of station; East is positive. | decimal degrees |
mesh | zooplankton net mesh (243; 202; 333; 505) | microns |
month_local | month of year | 1-12 |
station | station code | text |
sv_phyto | phytoplankton settled volume | milliliters |
sv_total | total settled volume of sample | milliliters |
sv_zoop | zooplankton settled volume | milliliters |
time_local | time of day | local time |
year | year of sampling | YYYY |
yrday_local | local day and decimal time | as 326.5 for the 326th day of the year |
region | Northern (NSE) or Southern (SSE) Southeast Alaska. | text |
depth_w | depth of water at this site | meters |
lat_haul | latitude at start of haul; North is positive | decimal degrees |
lon_haul | longitude at start of haul, W is negative | decimal degrees |
taxon | High-level taxonomic identification. | text |
cruise_id | cruise identification: jc=John Cobb; next two numbers = year; last 2 numbers = cruise # ('x' means cruise # is not known) | text |
species | Species name (or genus and species). | text |
stage | Stage/sex/size. | text |
common_name | Common name of the organism. | text |
Dataset-specific Instrument Name | Bongo Nets |
Generic Instrument Name | Bongo Net |
Dataset-specific Description | 60-cm diameter tandem frame with 505-µm and 333-µm mesh nets. A VEMCO ML-08-TDR time-depth recorder was used with the oblique bongo hauls to record the maximum sampling depth of each haul. General Oceanics model 2031 or Rigosha flow meters were placed inside the bongo and deep conical nets for calculation of filtered water volumes. |
Generic Instrument Description | A Bongo Net consists of paired plankton nets, typically with a 60 cm diameter mouth opening and varying mesh sizes, 10 to 1000 micron. The Bongo Frame was designed by the National Marine Fisheries Service for use in the MARMAP program. It consists of two cylindrical collars connected with a yoke so that replicate samples are collected at the same time. Variations in models are designed for either vertical hauls (OI-2500 = NMFS Pairovet-Style, MARMAP Bongo, CalVET) or both oblique and vertical hauls (Aquatic Research). The OI-1200 has an opening and closing mechanism that allows discrete "known-depth" sampling. This model is large enough to filter water at the rate of 47.5 m3/minute when towing at a speed of two knots. More information: Ocean Instruments, Aquatic Research, Sea-Gear |
Dataset-specific Instrument Name | CTD Seabird 19 |
Generic Instrument Name | CTD Sea-Bird SEACAT 19 |
Dataset-specific Description | The CTD data were collected with a Sea-Bird1 SBE 19 Seacat profiler to 200 m or within 10 m of the bottom. |
Generic Instrument Description | The Sea-Bird SBE 19 SEACAT Recorder measures conductivity, temperature, and pressure (depth). The SEACAT is self-powered and self-contained and can be deployed in profiling or moored mode. The SBE 19 SEACAT was replaced in 2001 by the 19plus. more information from Sea-Bird Electronics |
Dataset-specific Instrument Name | Niskin Bottle |
Generic Instrument Name | Niskin bottle |
Generic Instrument Description | A Niskin bottle (a next generation water sampler based on the Nansen bottle) is a cylindrical, non-metallic water collection device with stoppers at both ends. The bottles can be attached individually on a hydrowire or deployed in 12, 24, or 36 bottle Rosette systems mounted on a frame and combined with a CTD. Niskin bottles are used to collect discrete water samples for a range of measurements including pigments, nutrients, plankton, etc. |
Dataset-specific Instrument Name | Radiometer |
Generic Instrument Name | Radiometer |
Dataset-specific Description | To quantify ambient light levels, light intensities (W* m-2) were recorded at each station with a Li-Cor Model 189 radiometer. |
Generic Instrument Description | Radiometer is a generic term for a range of instruments used to measure electromagnetic radiation (radiance and irradiance) in the atmosphere or the water column. For example, this instrument category includes free-fall spectral radiometer (SPMR/SMSR System, Satlantic, Inc), profiling or deck cosine PAR units (PUV-500 and 510, Biospherical Instruments, Inc). This is a generic term used when specific type, make and model were not specified. |
Dataset-specific Instrument Name | Thermosalinograph |
Generic Instrument Name | Thermosalinograph |
Dataset-specific Description | Surface (3-m) temperature and salinity data were collected at 1-minute intervals with an onboard thermosalinograph (Sea-Bird SBE 21). |
Generic Instrument Description | A thermosalinograph (TSG) is used to obtain a continuous record of sea surface temperature and salinity. On many research vessels the TSG is integrated into the ship's underway seawater sampling system and reported with the underway or alongtrack data. |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 1997-05-20 |
End Date | 2006-08-29 |
Description | Periodic salmon, zooplankton, nutrient sampling over a 10 year period. No cruise numbers are provided. The John N. Cobb is a 29-m research vessel with a main engine of 325 horsepower and a cruising speed of 10 knots. |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2000-05-19 |
End Date | 2000-05-25 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2000-06-26 |
End Date | 2000-07-02 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2000-07-19 |
End Date | 2000-07-25 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2000-08-25 |
End Date | 2000-08-31 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2000-09-25 |
End Date | 2000-10-01 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2001-05-19 |
End Date | 2001-05-25 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2001-06-26 |
End Date | 2001-07-02 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2001-07-27 |
End Date | 2001-08-02 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2001-08-26 |
End Date | 2001-09-01 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2001-09-26 |
End Date | 2001-10-02 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2002-05-21 |
End Date | 2002-05-24 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2002-06-22 |
End Date | 2002-06-27 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2002-07-23 |
End Date | 2002-07-31 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2002-08-23 |
End Date | 2002-08-30 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2003-05-20 |
End Date | 2003-05-25 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2003-06-21 |
End Date | 2003-06-30 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2003-07-22 |
End Date | 2003-07-29 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2003-08-08 |
End Date | 2003-08-11 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2003-08-21 |
End Date | 2003-08-27 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2004-05-18 |
End Date | 2004-05-23 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2004-06-20 |
End Date | 2004-06-28 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2004-07-23 |
End Date | 2004-07-31 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2004-08-21 |
End Date | 2004-08-28 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2005-05-22 |
End Date | 2005-05-25 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2005-06-20 |
End Date | 2005-07-03 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2005-07-20 |
End Date | 2005-08-01 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2005-08-23 |
End Date | 2005-08-29 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2006-05-22 |
End Date | 2006-05-25 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2006-06-21 |
End Date | 2006-07-02 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2006-07-21 |
End Date | 2006-07-31 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2006-08-19 |
End Date | 2006-08-29 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 1997-05-20 |
End Date | 1997-05-26 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 1997-06-22 |
End Date | 1997-06-28 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 1997-07-18 |
End Date | 1997-07-27 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 1997-08-22 |
End Date | 1997-08-28 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 1997-10-02 |
End Date | 1997-10-07 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Start Date | 1998-05-14 |
End Date | 1998-05-18 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 1998-06-24 |
End Date | 1998-07-01 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 1998-07-20 |
End Date | 1998-07-28 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 1998-08-24 |
End Date | 1998-08-30 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 1998-10-05 |
End Date | 1998-10-09 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 1999-05-20 |
End Date | 1999-05-25 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 1999-06-26 |
End Date | 1999-07-01 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 1999-07-24 |
End Date | 1999-07-30 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 1999-08-20 |
End Date | 1999-08-26 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 1999-09-26 |
End Date | 1999-10-02 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Website | |
Platform | R/V John N. Cobb |
Report | |
Start Date | 2003-06-12 |
End Date | 2003-06-15 |
Description | Southeast Alaska Coastal Monitoring (SECM) cruise |
Program in a Nutshell
Goal: To understand the effects of climate variability and climate change on the distribution, abundance and production of marine animals (including commercially important living marine resources) in the eastern North Pacific. To embody this understanding in diagnostic and prognostic ecosystem models, capable of capturing the ecosystem response to major climatic fluctuations.
Approach: To study the effects of past and present climate variability on the population ecology and population dynamics of marine biota and living marine resources, and to use this information as a proxy for how the ecosystems of the eastern North Pacific may respond to future global climate change. The strong temporal variability in the physical and biological signals of the NEP will be used to examine the biophysical mechanisms through which zooplankton and salmon populations respond to physical forcing and biological interactions in the coastal regions of the two gyres. Annual and interannual variability will be studied directly through long-term observations and detailed process studies; variability at longer time scales will be examined through retrospective analysis of directly measured and proxy data. Coupled biophysical models of the ecosystems of these regions will be developed and tested using the process studies and data collected from the long-term observation programs, then further tested and improved by hindcasting selected retrospective data series.
U.S. GLOBEC (GLOBal ocean ECosystems dynamics) is a research program organized by oceanographers and fisheries scientists to address the question of how global climate change may affect the abundance and production of animals in the sea.
The U.S. GLOBEC Program currently had major research efforts underway in the Georges Bank / Northwest Atlantic Region, and the Northeast Pacific (with components in the California Current and in the Coastal Gulf of Alaska). U.S. GLOBEC was a major contributor to International GLOBEC efforts in the Southern Ocean and Western Antarctic Peninsula (WAP).
Funding Source | Award |
---|---|
NSF Division of Ocean Sciences (NSF OCE) | |
National Oceanic and Atmospheric Administration (NOAA) |