Contributors | Affiliation | Role |
---|---|---|
Kujawinski, Elizabeth | Woods Hole Oceanographic Institution (WHOI) | Principal Investigator |
Longnecker, Krista | Woods Hole Oceanographic Institution (WHOI) | Co-Principal Investigator, Contact |
Rauch, Shannon | Woods Hole Oceanographic Institution (WHOI BCO-DMO) | BCO-DMO Data Manager |
Processed CTD data from all sensors mounted on the rosette from the KN210-04 cruise. Data include temperature, salinity, dissolved oxygen, fluorometry, turbidity, PAR, and SPAR.
The CTD rosette was provided by the Knorr Shipboard Science Support Group (SSSG) and was prepared for initial deployment by the SSSG representative on our cruise, Catie Graver. The system was a SBE9+ CTD with a depth limit of 6000m. The investigators used the dual SBE3T/SBE4C sensor system for temperature and conductivity. The rosette was also equipped with a SBE43 oxygen sensor, a Benthos/Datasonics PSA-916 altimeter, a Wet Labs FLNTURTD combination fluorometer and turbidity sensor, and a WetLabs C-star transmissometer (operating at a wavelength of 660 nm with a 25cm pathlength). For hydrocasts less than 1000m deep, the investigators attached a Biospherical Instruments QSP-200L4S underwater PAR sensor. This sensor was linked to a surface PAR sensor on the ship (QSR-240).
After the cruise, Krista Longnecker used SBE Data Processing to convert the data files, filter the data, remove wild edits, and bin average the data into 1-m bins. These processed data were exported to MATLAB and the SBE43 oxygen data were calibrated based on the discrete water samples analyzed during the cruise by Evan Howard (WHOI). Fluorescence values from the WET Labs ECO-AFL/FL have been converted from volts to milligrams per cubic meter using calibration values from WETLabs. The chlorophyll concentrations have not been further calibrated with discrete samples.
BCO-DMO Processing Notes:
- Parameter names were modified to conform with BCO-DMO naming conventions.
- lat_start and lon_start were added by joining the data to the event log and matching on the unique event number.
- Replaced 'NaN' and '-9.99E-29' with 'nd' to indicate 'no data'.
File |
---|
CTD.csv (Comma Separated Values (.csv), 26.55 MB) MD5:656bb4ca4fc85dc44e7582a6cf26ffe5 Primary data file for dataset ID 481164 |
Parameter | Description | Units |
cast | Consecutive cast number for the instrument. | dimensionless |
station | Identification number of the sampling station. | dimensionless |
date_start_utc | Date (UTC) given as 4-digit year -- 2-digit month -- 2-digit day in YYYYmmdd format. | unitless |
time_start_utc | Time (UTC) given as hour -- minute. | HHMM |
event_start | The event number from the ELOG maintained during the cruise. | dimensionless |
lat_start | Latitude at the time the event started (from the cruise event log). | decimal degrees |
lon_start | Longitude at the time the event started (from the cruise event log). | decimal degrees |
depth | Depth. (Orignally called 'depSM'.) | meters |
press | Pressure. (Originally called 'prDM'.) | decibars (db) |
temp | Temperature from primary sensor on CTD. (Originally called 't090C'.) | degrees Celsius (ITS-90) |
temp2 | Temperature from secondary sensor on CTD. (Originally called 't190C'.). | degrees Celsius (ITS-90) |
sal | Salinity from primary sensor on CTD. (Originally called 'sal00'.) | Practical Salinity Units (PSU) |
sal2 | Salinity from secondary sensor on CTD. (Originally called 'sal11'.) | Practical Salinity Units (PSU) |
O2_mL_L | Oxygen from SBE43. | milliliters per liter (mL/L) |
density | Density from primary sensor on CTD. (Originally called 'density00'.) | kilograms per cubic meter (kg/m^3) |
density2 | Density from secondary sensor on CTD. (Originally called 'density11'.) | kilograms per cubic meter (kg/m^3) |
latitude | Latitude. | decimal degrees |
longitude | Longitude. | decimal degrees |
fluor | Fluorescence from WET Labs ECO-AFL/FL. (Originally called 'flECO_AFL'.) | milligrams per cubic meter (mg/m^3) |
trans | Beam transmission from WET Labs C-Star. (Originally called 'CStarTr0'.) | percent (%) |
turbidity | Turbidity from WET Labs ECO. (Originally called 'tubWETntu0'.) | Nephelometric Turbidity Units (NTU) |
par | PAR / irradiance from Biospherical/Licor. | microEinsteins per square meter per second (μE/m2-sec) |
spar | SPAR / surface irradiance. | microEinsteins per square meter per second (μE/m2-sec) |
sound_vel | Sound velociy. (Originally called 'svCM1'.) | meters per second (m/s) (Chen-Millero) |
flag | Data quality flag. | dimensionless |
Dataset-specific Instrument Name | Benthos/Datasonics PSA-916 altimeter |
Generic Instrument Name | Altimeter |
Dataset-specific Description | A Benthos/Datasonics PSA-916 altimeter was equipped on the CTD rosette. |
Generic Instrument Description | An instrument that measures height above a fixed surface. The data can be used to map ocean-surface topography and generate gridded surface height fields. |
Dataset-specific Instrument Name | Biospherical Instruments QSP-200L4S underwater PAR sensor |
Generic Instrument Name | Biospherical QSP-200L underwater PAR Sensor |
Dataset-specific Description | For hydrocasts less than 1000m deep, a Biospherical Instruments QSP-200L4S underwater PAR sensor was attached to the CTD rosette. This sensor was linked to a surface PAR sensor on the ship (QSR-240). |
Generic Instrument Description | Underwater radiometer with a PAR spectral response (400-700nm). Standard configuration had a spherical collector measuring 4-pi scalar irradiance but a flat plate cosine collector was available as an identically-designated option. |
Dataset-specific Instrument Name | QSR-240 surface PAR sensor |
Generic Instrument Name | Biospherical QSR-240 surface PAR |
Dataset-specific Description | For hydrocasts less than 1000m deep, a Biospherical Instruments QSP-200L4S underwater PAR sensor was attached to the CTD rosette. This sensor was linked to a surface PAR sensor on the ship (QSR-240). |
Generic Instrument Description | Shipboard radiometer with a PAR spectral response (400-700nm) designed to monitor surface irradiance during underwater light profile measurement. Hemispherical collector measuring 2-pi scalar irradiance. |
Dataset-specific Instrument Name | CTD SBE 911plus |
Generic Instrument Name | CTD Sea-Bird SBE 911plus |
Generic Instrument Description | The Sea-Bird SBE 911 plus is a type of CTD instrument package for continuous measurement of conductivity, temperature and pressure. The SBE 911 plus includes the SBE 9plus Underwater Unit and the SBE 11plus Deck Unit (for real-time readout using conductive wire) for deployment from a vessel. The combination of the SBE 9 plus and SBE 11 plus is called a SBE 911 plus. The SBE 9 plus uses Sea-Bird's standard modular temperature and conductivity sensors (SBE 3 plus and SBE 4). The SBE 9 plus CTD can be configured with up to eight auxiliary sensors to measure other parameters including dissolved oxygen, pH, turbidity, fluorescence, light (PAR), light transmission, etc.). more information from Sea-Bird Electronics |
Dataset-specific Instrument Name | SBE43 oxygen sensor |
Generic Instrument Name | Sea-Bird SBE 43 Dissolved Oxygen Sensor |
Dataset-specific Description | An SBE43 oxygen sensor was equipped on the CTD rosette. |
Generic Instrument Description | The Sea-Bird SBE 43 dissolved oxygen sensor is a redesign of the Clark polarographic membrane type of dissolved oxygen sensors. more information from Sea-Bird Electronics |
Dataset-specific Instrument Name | Dual SBE3T/SBE4C |
Generic Instrument Name | Sea-Bird SBE-3 Temperature Sensor |
Dataset-specific Description | A dual SBE3T/SBE4C sensor system for temperature and conductivity was equipped on the CTD rosette. |
Generic Instrument Description | The SBE-3 is a slow response, frequency output temperature sensor manufactured by Sea-Bird Electronics, Inc. (Bellevue, Washington, USA). It has an initial accuracy of +/- 0.001 degrees Celsius with a stability of +/- 0.002 degrees Celsius per year and measures seawater temperature in the range of -5.0 to +35 degrees Celsius. more information from Sea-Bird Electronics |
Dataset-specific Instrument Name | Dual SBE3T/SBE4C |
Generic Instrument Name | Sea-Bird SBE-4 Conductivity Sensor |
Dataset-specific Description | A dual SBE3T/SBE4C sensor system for temperature and conductivity was equipped on the CTD rosette. |
Generic Instrument Description | The Sea-Bird SBE-4 conductivity sensor is a modular, self-contained instrument that measures conductivity from 0 to 7 Siemens/meter. The sensors (Version 2; S/N 2000 and higher) have electrically isolated power circuits and optically coupled outputs to eliminate any possibility of noise and corrosion caused by ground loops. The sensing element is a cylindrical, flow-through, borosilicate glass cell with three internal platinum electrodes. Because the outer electrodes are connected together, electric fields are confined inside the cell, making the measured resistance (and instrument calibration) independent of calibration bath size or proximity to protective cages or other objects. |
Dataset-specific Instrument Name | WL CSTAR Trans |
Generic Instrument Name | WET Labs {Sea-Bird WETLabs} C-Star transmissometer |
Dataset-specific Description | A WetLabs C-star transmissometer (operating at a wavelength of 660 nm with a 25cm pathlength) was equipped on the CTD rosette. |
Generic Instrument Description | The C-Star transmissometer has a novel monolithic housing with a highly intgrated opto-electronic design to provide a low cost, compact solution for underwater measurements of beam transmittance. The C-Star is capable of free space measurements or flow-through sampling when used with a pump and optical flow tubes. The sensor can be used in profiling, moored, or underway applications. Available with a 6000 m depth rating.
More information on Sea-Bird website: https://www.seabird.com/c-star-transmissometer/product?id=60762467717 |
Dataset-specific Instrument Name | Wet Labs FLNTURTD |
Generic Instrument Name | WetLabs FLNTU |
Dataset-specific Description | A Wet Labs FLNTURTD combination fluorometer and turbidity sensor was equipped on the CTD rosette. |
Generic Instrument Description | The WetLabs ECO FLNTU is a dual-wavelength, single-angle sensor for simultaneously determining both chlorophyll fluorescence and turbidity. It detects light scattered by particles suspended in water, generating an output voltage proportional to turbidity or suspended solids. Scaling factors are used to convert the voltage readings to values representing chlorophyll concentration and turbidity expressed in Nephelometric Turbidity Units (NTUs). |
Website | |
Platform | R/V Knorr |
Start Date | 2013-03-25 |
End Date | 2013-05-09 |
Description | Western Atlantic cruise started at Montevideo, Uruguay and ended at Bridgetown, Barbados.
Science Objectives:
1. Characterize deep ocean dissolved organic matter in water masses of western Atlantic Ocean.
2. Characterize microbial community at selected stations and at selected depths.
3. Characterize metabolic capabilities of surface, mesopelagic and bathypelagic microbial consortia vis-a-vis the degradation of organic matter from each zone.
4. Examine metabolic and phylogenetic links between microbes in different marine zones (surface, meso-pelagic and bathypelagic depths).
Science Activities:
1. Collection of discrete water samples by Niskin-bottles.
2. Collection of microbial communities from these water samples, by in-situ pumping, or by net-traps and net-tows.
3. Incubation experiments in lab and on deck.
4. Underway mass spectrometry and flow cytometry, from seawater intake.
More information is available from the WHOI Cruise Planning Synopsis.
Additional cruise information and original data are available from the NSF R2R Data Catalog. |
Transformations of dissolved organic matter (DOM) in the deep ocean have profound impacts on the global carbon cycle due to the sequestration of carbon dioxide (CO2) away from the atmosphere. Although research has been conducted on the high molecular weight component of this material, the same cannot be said for low molecular weight DOM because the needed analytical techniques have not been available to determine its composition and reactivity.
In recent years, a research team at Woods Hole Oceanographic Institution has acquired the necessary analytical capability. As such, in this project, they will carry out the first systematic survey of deep ocean DOM in the western Atlantic Ocean to characterize the low molecular weight fraction of DOM in southward flowing North Atlantic Deep Water (NADW), northward flowing Antarctic Bottom Water (AABW), and Antarctic Intermediate Water (AAIW). Using ultrahigh resolution mass spectrometry and multi-stage fragmentation coupled to liquid chromatography, the scientists will determine the spatial variability in the composition of DOM along the flow path of the water masses, as well as assess the source water, transport, and surface processes that contribute to temporal changes in DOM composition. These results will be augmented with structural elucidation and quantitative assays of unique marker compounds for each water mass. Results will provide important insights into the biogeochemical reactions that govern DOM dynamics in the deep ocean.
The Ocean Carbon and Biogeochemistry (OCB) program focuses on the ocean's role as a component of the global Earth system, bringing together research in geochemistry, ocean physics, and ecology that inform on and advance our understanding of ocean biogeochemistry. The overall program goals are to promote, plan, and coordinate collaborative, multidisciplinary research opportunities within the U.S. research community and with international partners. Important OCB-related activities currently include: the Ocean Carbon and Climate Change (OCCC) and the North American Carbon Program (NACP); U.S. contributions to IMBER, SOLAS, CARBOOCEAN; and numerous U.S. single-investigator and medium-size research projects funded by U.S. federal agencies including NASA, NOAA, and NSF.
The scientific mission of OCB is to study the evolving role of the ocean in the global carbon cycle, in the face of environmental variability and change through studies of marine biogeochemical cycles and associated ecosystems.
The overarching OCB science themes include improved understanding and prediction of: 1) oceanic uptake and release of atmospheric CO2 and other greenhouse gases and 2) environmental sensitivities of biogeochemical cycles, marine ecosystems, and interactions between the two.
The OCB Research Priorities (updated January 2012) include: ocean acidification; terrestrial/coastal carbon fluxes and exchanges; climate sensitivities of and change in ecosystem structure and associated impacts on biogeochemical cycles; mesopelagic ecological and biogeochemical interactions; benthic-pelagic feedbacks on biogeochemical cycles; ocean carbon uptake and storage; and expanding low-oxygen conditions in the coastal and open oceans.
Functions carried out by microscopic inhabitants of the surface ocean affect every aspect of life on our planet, regardless of distance from the coast. Ocean phytoplankton are responsible for half of the photosynthesis on Earth, the first step in a complex system that annually withdraws 50 billion metric tons of carbon from the atmosphere to sustain their growth. Of this, 25 billion metric tons participate in a rapid cycle in which biologically reactive material is released into seawater and converted back into carbon dioxide by marine bacteria within hours to days. The chemical-microbe network at the heart of this fast cycle remains poorly constrained; consequently, its primary currencies and controls remain elusive; its sensitivities to changing ocean conditions are unknown; and its responses to future climate scenarios are not predictable. The Center for Chemical Currencies of a Microbial Planet (C-CoMP) integrates research, education and knowledge transfer activities to develop a mechanistic understanding of surface ocean carbon flux within the context of a changing ocean and through increased participation in ocean sciences. C-CoMP supports science teams that merge biology, chemistry, modeling, and informatics to close long-standing knowledge gaps in the identities and dynamics of organic molecules that serve as the currencies of elemental transfer between the ocean and atmosphere. C-CoMP fosters education, outreach, and knowledge transfer activities that engage students of all ages, broaden participation in the next generation of ocean scientists, and extend novel open-science approaches into complementary academic and industrial communities. The Center framework is critical to this mission, uniquely facilitating an open exchange of experimental and computational science, methodological and conceptual challenges, and collaborations that establish integrated science and education partnerships. With expanded participation in ocean science research and ocean literacy across the US society, the next generation of ocean scientists will better reflect the diverse US population.
Climate-carbon feedbacks on the marine carbon reservoir are major uncertainties for future climate projections, and the trajectory and rate of ocean changes depend directly on microbial responses to temperature increases, ocean acidification, and other perturbations driven by climate change. C-CoMP research closes an urgent knowledge gap in the mechanisms driving carbon flow between ocean and atmosphere, with global implications for predictive climate models. The Center supports interdisciplinary science teams following open and reproducible science practices to address: (1) the chemical currencies of surface ocean carbon flux; (2) the structure and regulation of the chemical-microbe network that mediates this flux; and (3) sensitivity of the network and its feedbacks on climate. C-CoMP leverages emerging tools and technologies to tackle critical challenges in these themes, in synergy with existing ocean programs and consistent with NSF’s Big Ideas. C-CoMP education and outreach activities seek to overcome barriers to ocean literacy and diversify participation in ocean research. The Center is developing (1) initiatives to expand ocean literacy in K-12 and the broader public, (2) ocean sciences undergraduate curricula and research opportunities that provide multiple entry points into research experiences, (3) post-baccalaureate programs to transition undergraduates into graduate education and careers in ocean science, and (4) interdisciplinary graduate student and postdoctoral programs that prepare the next generation of ocean scientists. The C-CoMP team includes education faculty who evaluate the impacts of education and outreach activities and export successful STEM initiatives to the education community. C-CoMP is revolutionizing the technologies for studying chemical transformations in microbial systems to build understanding of the outsized impact of microbes on elemental cycles. Open science, cross-disciplinary collaborations, community engagement, and inclusive practices foster strategic advances in critical science problems and STEM initiatives. C-CoMP science, education, and knowledge-transfer themes are efficiently addressed through a sustained network of scientists addressing critical research challenges while broadening the workforce that will tackle multi-disciplinary problems with academic, industrial and policy partners.
This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.
The Program's Data Management Plan (DMP) is available as a PDF document.
Funding Source | Award |
---|---|
NSF Division of Ocean Sciences (NSF OCE) |