Percent coverage along a transect or subsample of each of four substrate types recorded during emergent and rapid emergent surveys conducted in the subtidal zone of northern California, Sonoma and Mendocino counties, from 1999 to 2023

Website: https://www.bco-dmo.org/dataset/928527
Data Type: Other Field Results
Version: 1
Version Date: 2024-08-30

Project
» Collaborative Research: The effects of marine heatwaves on reproduction, larval transport and recruitment in sea urchin metapopulations (Urchin metapopulations)
ContributorsAffiliationRole
Rogers-Bennett, LauraUniversity of California-Davis (UC Davis-BML)Principal Investigator, Contact
Klamt, Robert R.University of California-Davis (UC Davis-BML)Data Manager
Rauch, ShannonWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager

Abstract
The Kelp Forest Monitoring data record span surveys across 28 years from 1971 through 2023 at 20 locations on the Sonoma-Mendocino Coast, Northern California, and span the major marine heatwave of 2014-2016. Years without data, inclusive: 1972-1985, 1987, 1988, 1993-1998, 2002, 2020, 2021. These surveys are ongoing and are conducted by the California Department of Fish and Wildlife dive team with participation from dive program partners at UC Davis, UC Santa Cruz, Cal Poly Humboldt, Sonoma State and other dive programs and volunteers. Not all sites were surveyed in all years. Surveys prior to 2003 were not conducted by the same teams or with the same methods except that all surveys were done using Scuba along 30 x 2m transects randomly placed in the subtidal zone in rocky habitats dominated by bull kelp, Nereocystis luetkeana, forests. These randomly placed band transects surveys were stratified by depth (A=0-15, B=16-30, C=31-45, D=46-60 ft) as we know sea urchin and abalone populations differ by depth. Data collected include the number of live, dying (in some years during the mass mortality events), and sea urchins (red-Mesocentrotus franciscanus and purple-Strongylocentrotus purpuratus), red abalone (Haliotis rufescens), pinto abalone (H. kamtschatkana), flat abalone (H. walallensis), as well as empty abalone shells (again in some years). Additional data collected (if scuba bottom time and/or air allowed): red abalone size, numbers or presence of associated species such as sea stars and predators, algal group quantification, and presence of bull kelp, substrate type. Data on algae and associated species differed depending on the year and the focus of the studies in response to ecosystem conditions but all years quantified sea urchins and abalones. This dataset provides in situ estimates of the coverage of the substrate along each survey transect as a percentage of four substrate types: reef, boulder, cobble, and sand.


Coverage

Location: Sub-tidal zone, North Coast of California, Sonoma and Mendocino counties
Spatial Extent: N:39.428584 E:-123.071539 S:38.315361 W:-123.82905
Temporal Extent: 1999-06-23 - 2016-09-14

Methods & Sampling

All surveys were done using Scuba along 30-meter x 2-meter (m) transects randomly placed in the subtidal zone in rocky habitats dominated by bull kelp, Nereocystis luetkeana, forests. These randomly placed band transect surveys were stratified by depth (A=0-15, B=16-30, C=31-45, D=46-60 ft) as we know sea urchin and abalone populations differ by depth.

Each diver (2 divers) surveyed a 1-m wide swath along each the transect, collecting the following data: the number of live, dying (in some years during the mass mortality events), and sea urchins (red-Mesocentrotus franciscanus and purple-Strongylocentrotus purpuratus), red abalone (Haliotis rufescens), pinto abalone (H. kamtschatkana), flat abalone (H. walallensis), as well as empty abalone shells (again in some years).

The data specific to this dataset are the percentages of four different substrate types: reef, boulder, cobble, and sand. Data on the substrate types differed depending on the year and the focus of the studies in response to ecosystem conditions. Note that some transects were subsampled: "L" is left side, "R" is right side, "LR" is the entire 30m x 2m transect, both sides. Not all transects were subsampled due to time constraints; not all survey transects were sampled.

In some rare cases, substrate can range from 95-105 for a subsample, and from 190-210 for both sides of the full transect, so they should be rounded off to 100 or 200%.


Data Processing Description

Data were entered onto waterproof data sheets during each survey. The field sheet data were then entered into a Microsoft Access database, where sorted and exported to Excel files. Once data were proofed and errors in calculations of percentages reduced to within 5% of 100% for each side of a transect, they were saved as an Excel file and a text file as comma-separated values (CSV).

Note that substrate percentage should add up to 100% on one side of the transect or 200% for both sides of the transect. In some rare cases substrate can range from 95-105 for a subsample, and from 190-210 for both sides of the full transect, so they should be rounded off to 100 or 200%.


BCO-DMO Processing Description

- Imported original files "NSF_OCE_2023664_KelpForestSurveys_SUBSTRATE_CODES_v1_240122.csv" (substrate code list) and "NSF_OCE_2023664_KelpForestSurveys_LOCATIONS_v4_20240105.csv" (site code list) into the BCO-DMO system.
- Imported original file "NSF_OCE_2023664_KelpForestSurveys_SUBSTRATE_v7_20240725.csv" (substrate coverage data) into the BCO-DMO system.
- Added the following columns from the site code list to the substrate coverage data: SiteName.
- Added the following columns from the substrate code list to the substrate coverage data: Substrate Description.
- Renamed fields to comply with BCO-DMO naming conventions.
- Converted the SurveyDate column to YYYY-MM-DD format.
- Saved the final file as "928527_v1_kelp_forest_substrate_coverage.csv".


Problem Description

Data on substrate were not collected in 2002. Not all locations were surveyed in every year for the temporal bounds.

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Related Publications

Arafeh-Dalmau, N., Schoeman, D. S., Montaño-Moctezuma, G., Micheli, F., Rogers-Bennett, L., Olguin-Jacobson, C., & Possingham, H. P. (2020). Marine heat waves threaten kelp forests. Science, 367(6478), 635–635. https://doi.org/10.1126/science.aba5244
General
Hamilton, S. L., Saccomanno, V. R., Heady, W. N., Gehman, A. L., Lonhart, S. I., Beas-Luna, R., Francis, F. T., Lee, L., Rogers-Bennett, L., Salomon, A. K., & Gravem, S. A. (2021). Disease-driven mass mortality event leads to widespread extirpation and variable recovery potential of a marine predator across the eastern Pacific. Proceedings of the Royal Society B: Biological Sciences, 288(1957), 20211195. https://doi.org/10.1098/rspb.2021.1195
Results
McPherson, M. L., Finger, D. J. I., Houskeeper, H. F., Bell, T. W., Carr, M. H., Rogers-Bennett, L., & Kudela, R. M. (2021). Large-scale shift in the structure of a kelp forest ecosystem co-occurs with an epizootic and marine heatwave. Communications Biology, 4(1). https://doi.org/10.1038/s42003-021-01827-6
Results
Rogers-Bennett, L., & Catton, C. A. (2019). Marine heat wave and multiple stressors tip bull kelp forest to sea urchin barrens. Scientific Reports, 9(1). https://doi.org/10.1038/s41598-019-51114-y
Methods
Rogers-Bennett, L., & Catton, C. A. (2022). Cascading impacts of a climate-driven ecosystem transition intensifies population vulnerabilities and fishery collapse. Frontiers in Climate, 4. https://doi.org/10.3389/fclim.2022.908708
Results
Rogers-Bennett, L., Kashiwada, J. V., Taniguchi, I. K., Kawana, S. K., & Catton, C. A. (2019). Using Density-Based Fishery Management Strategies to Respond to Mass Mortality Events. Journal of Shellfish Research, 38(2), 485. https://doi.org/10.2983/035.038.0232
General
Rogers-Bennett, L., Kawana, S.K., Catton, C.A., Klamt, R., Dondanville, R., Maguire, A., and D. Okamoto. (In revision). Abalone recruitment patterns before and after sea urchin barrens formation in northern California: Incorporating climate change. New Zealand Journal Marine and Freshwater Research.
Results
Rogers-Bennett, L., Klamt, R., & Catton, C. A. (2021). Survivors of Climate Driven Abalone Mass Mortality Exhibit Declines in Health and Reproduction Following Kelp Forest Collapse. Frontiers in Marine Science, 8. https://doi.org/10.3389/fmars.2021.725134
Results

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Parameters

ParameterDescriptionUnits
Survey_Num

The unique identifier used for each dive transect. For example, ALB18-A1-1 where ALB is the DFW_short_code for Albion Bay; 18 is the year (2018); A1-1 is the randomized transect. For those years with a letter preceding a number, the letter refers to a depth stratum in feet: A=0-15, B=16-30, C=31-45, D=46-60 ft.

unitless
DFW_short_code

An alphanumeric code for the location

unitless
SiteName

The name of the location, e.g., Albion Bay

unitless
Lat

The latitude of the location

decimal degrees
Lon

The longitude of the location; negative values = West

decimal degrees
SurveyType

There are two survey types: Emergent surveys do not involve rolling over boulders or picking up rocks and do involve looking in rock crevices and under rocky overhangs. Transect-30m x 2 m (Emergent) - pre-2016. Transect-30m x 2 m (Rapid Emergent) - post-2017

unitless
SurveyDate

The date of the dive survey

unitless
Year

4-digit year of the dive survey

unitless
Month

Month of the dive survey

unitless
Day

Day of month of the dive survey

unitless
Timezone

Time zone; all surveys were conducted in the Pacific Standard Time Zone

unitless
Subsample

The left or right side of the transect. Not all transects were subsampled due to time constraints. "L" is left side, "R" is right side, "LR" is the entire 30m x 2m transect, both sides.

unitless
SubstrateID

The alphanumeric code for the substrate type.

unitless
Substrate

Descriptions of the four substrate types in text.

unitless
PercentCover

The percent coverage of the particular substrate of the transect or transect subsample

unitless (percent)
Substrate_Description

The description of the substrate types recorded by divers

unitless
COMMENTS

The divers' comments regarding conditions and other observations that may affect the data

unitless
ProtectionStatus

The special regulations for the location of the transect, e.g., no take MPA is a no take Marine Protected Area

unitless
AverageDepth

The average depth of the transect

feet
MinimumDepth

The shallowest depth of the transect

feet
MaximumDepth

The deepest part of the transect

feet


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Instruments

Dataset-specific Instrument Name
calipers
Generic Instrument Name
calipers
Generic Instrument Description
A caliper (or "pair of calipers") is a device used to measure the distance between two opposite sides of an object. Many types of calipers permit reading out a measurement on a ruled scale, a dial, or a digital display.

Dataset-specific Instrument Name
Handheld GPS (WGS84 datum)
Generic Instrument Name
Global Positioning System Receiver
Generic Instrument Description
The Global Positioning System (GPS) is a U.S. space-based radionavigation system that provides reliable positioning, navigation, and timing services to civilian users on a continuous worldwide basis. The U.S. Air Force develops, maintains, and operates the space and control segments of the NAVSTAR GPS transmitter system. Ships use a variety of receivers (e.g. Trimble and Ashtech) to interpret the GPS signal and determine accurate latitude and longitude.

Dataset-specific Instrument Name
Generic Instrument Name
Self-Contained Underwater Breathing Apparatus
Generic Instrument Description
The self-contained underwater breathing apparatus or scuba diving system is the result of technological developments and innovations that began almost 300 years ago. Scuba diving is the most extensively used system for breathing underwater by recreational divers throughout the world and in various forms is also widely used to perform underwater work for military, scientific, and commercial purposes. Reference: https://oceanexplorer.noaa.gov/technology/technical/technical.html

Dataset-specific Instrument Name
dive slates, underwater data sheets, pencils, and erasers
Generic Instrument Name
Underwater Writing Slate
Generic Instrument Description
Underwater writing slates and pencils are used to transport pre-dive plans underwater, to record facts whilst underwater and to aid communication with other divers.


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Project Information

Collaborative Research: The effects of marine heatwaves on reproduction, larval transport and recruitment in sea urchin metapopulations (Urchin metapopulations)

Coverage: Coastal California Waters from San Diego through Mendocino Counties


NSF Award Abstract:
Rapid and extreme warming events such as El Niño and marine heatwaves have had ecological and economic impacts on nearshore marine ecosystems. These impacts include reductions in biomass and collapses in commercial fisheries. For many species, population booms and busts are controlled by shifts in reproduction and juvenile dispersal related to warmer temperatures and ocean circulation. However, how population fluctuations are shaped by interacting processes that control adult reproduction and larval survival remains unclear. Marine heatwaves often accompany major disruptions in ocean circulation, which can affect survival and the distribution of species that produce free-floating, planktonic larvae. As a result, species can be impacted directly by temperature effects on organismal reproduction and survival, and indirectly by shifts in ocean circulation that affect larval success. This project is examining how the joint effects of temperature and ocean circulation are controlling populations of purple sea urchins (Strongylocentrotus purpuratus). To address project objectives, the team is developing oceanographic models to predict dispersal of planktonic larvae in combination with controlled experiments on adult reproductive success. This project is advancing the understanding of how ecologically important species respond to ocean temperature and circulation, which are forecast to shift under future climate change scenarios. Broader impacts of the project include training of students and post-docs in STEM and educational outreach. Curriculum development and implementation is occurring in collaboration with existing K-12 outreach programs that focus on underserved communities and under-represented groups. The goal is to empower the next generation of scientists to use integrative approaches to predict ecological consequences of climate change.

Purple sea urchins are an ideal species for studying the coupled impacts of warming and ocean circulation on recruitment and survival given a wealth of ecological and organismal data. The species has a mapped genome, can be transported large distances as larvae by ocean currents, and larval abundances in California exhibit orders of magnitude variation with heatwaves and El Niño fluctuations. To quantify the processes that shape spatial and temporal variability in larval supply, researchers are applying a novel combination of biophysical modeling, experiments and statistical modeling of long-term, high-resolution data on larval settlement across the Southern California Bight (SCB). Research module 1 is quantifying spatial and temporal patterns of larval transport using a 3D-biophysical model of the SCB. The model is testing how interactions among historical changes in ocean circulation and temperature, larval life history, and larval behavioral traits affect variation in larval supply in space and time. Research module 2 is focused on how temperature could affect spatial and temporal variation in egg production. Experiments are characterizing reproductive thermal performance curves and quantifying how these vary among populations and organismal history. A novel assay is assessing epigenetic regulation of gene expression associated with performance curves. Finally, Module 3 will integrate mechanistic models from Modules 1 and 2 to statistically assess their ability to explain spatial and temporal trends in a nearly three-decade dataset of larval settlement from six sites in the SCB. This is one of the first studies that integrates models of larval transport, reproductive performance and settlement data to empirically test how physical and biological processes affect local recruitment patterns in complex marine meta-populations.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)

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