Contributors | Affiliation | Role |
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Rogers-Bennett, Laura | University of California-Davis (UC Davis-BML) | Principal Investigator, Contact |
Klamt, Robert R. | University of California-Davis (UC Davis-BML) | Data Manager |
Rauch, Shannon | Woods Hole Oceanographic Institution (WHOI BCO-DMO) | BCO-DMO Data Manager |
All surveys were done using Scuba along 30-meter x 2-meter (m) transects randomly placed in the subtidal zone in rocky habitats dominated by bull kelp, Nereocystis luetkeana, forests. These randomly placed band transect surveys were stratified by depth (A=0-15, B=16-30, C=31-45, D=46-60 ft) as we know sea urchin and abalone populations differ by depth. Each diver (2 divers) surveyed a 1-m wide swath along each the transect, collecting the following data: the number of live, dying (in some years during the mass mortality events), and sea urchins (red-Mesocentrotus franciscanus and purple-Strongylocentrotus purpuratus), red abalone (Haliotis rufescens), pinto abalone (H. kamtschatkana), flat abalone (H. walallensis), as well as empty abalone shells (again in some years). The data specific to this dataset are the percentages of four different substrate types: reef, boulder, cobble, and sand. Data on the substrate types differed depending on the year and the focus of the studies in response to ecosystem conditions. Note that some transects were subsampled: "L" is left side, "R" is right side, "LR" is the entire 30m x 2m transect, both sides. Not all transects were subsampled due to time constraints; not all survey transects were sampled. In some rare cases, substrate can range from 95-105 for a subsample, and from 190-210 for both sides of the full transect, so they should be rounded off to 100 or 200%.
Data were entered onto waterproof data sheets during each survey. The field sheet data were then entered into a Microsoft Access database, where sorted and exported to Excel files. Once data were proofed and errors in calculations of percentages reduced to within 5% of 100% for each side of a transect, they were saved as an Excel file and a text file as comma-separated values (CSV).
Note that substrate percentage should add up to 100% on one side of the transect or 200% for both sides of the transect. In some rare cases substrate can range from 95-105 for a subsample, and from 190-210 for both sides of the full transect, so they should be rounded off to 100 or 200%.
- Imported original files "NSF_OCE_2023664_KelpForestSurveys_SUBSTRATE_CODES_v1_240122.csv" (substrate code list) and "NSF_OCE_2023664_KelpForestSurveys_LOCATIONS_v4_20240105.csv" (site code list) into the BCO-DMO system.
- Imported original file "NSF_OCE_2023664_KelpForestSurveys_SUBSTRATE_v7_20240725.csv" (substrate coverage data) into the BCO-DMO system.
- Added the following columns from the site code list to the substrate coverage data: SiteName.
- Added the following columns from the substrate code list to the substrate coverage data: Substrate Description.
- Renamed fields to comply with BCO-DMO naming conventions.
- Converted the SurveyDate column to YYYY-MM-DD format.
- Saved the final file as "928527_v1_kelp_forest_substrate_coverage.csv".
Parameter | Description | Units |
Survey_Num | The unique identifier used for each dive transect. For example, ALB18-A1-1 where ALB is the DFW_short_code for Albion Bay; 18 is the year (2018); A1-1 is the randomized transect. For those years with a letter preceding a number, the letter refers to a depth stratum in feet: A=0-15, B=16-30, C=31-45, D=46-60 ft. | unitless |
DFW_short_code | An alphanumeric code for the location | unitless |
SiteName | The name of the location, e.g., Albion Bay | unitless |
Lat | The latitude of the location | decimal degrees |
Lon | The longitude of the location; negative values = West | decimal degrees |
SurveyType | There are two survey types: Emergent surveys do not involve rolling over boulders or picking up rocks and do involve looking in rock crevices and under rocky overhangs. Transect-30m x 2 m (Emergent) - pre-2016. Transect-30m x 2 m (Rapid Emergent) - post-2017 | unitless |
SurveyDate | The date of the dive survey | unitless |
Year | 4-digit year of the dive survey | unitless |
Month | Month of the dive survey | unitless |
Day | Day of month of the dive survey | unitless |
Timezone | Time zone; all surveys were conducted in the Pacific Standard Time Zone | unitless |
Subsample | The left or right side of the transect. Not all transects were subsampled due to time constraints. "L" is left side, "R" is right side, "LR" is the entire 30m x 2m transect, both sides. | unitless |
SubstrateID | The alphanumeric code for the substrate type. | unitless |
Substrate | Descriptions of the four substrate types in text. | unitless |
PercentCover | The percent coverage of the particular substrate of the transect or transect subsample | unitless (percent) |
Substrate_Description | The description of the substrate types recorded by divers | unitless |
COMMENTS | The divers' comments regarding conditions and other observations that may affect the data | unitless |
ProtectionStatus | The special regulations for the location of the transect, e.g., no take MPA is a no take Marine Protected Area | unitless |
AverageDepth | The average depth of the transect | feet |
MinimumDepth | The shallowest depth of the transect | feet |
MaximumDepth | The deepest part of the transect | feet |
Dataset-specific Instrument Name | calipers |
Generic Instrument Name | calipers |
Generic Instrument Description | A caliper (or "pair of calipers") is a device used to measure the distance between two opposite sides of an object. Many types of calipers permit reading out a measurement on a ruled scale, a dial, or a digital display. |
Dataset-specific Instrument Name | Handheld GPS (WGS84 datum) |
Generic Instrument Name | Global Positioning System Receiver |
Generic Instrument Description | The Global Positioning System (GPS) is a U.S. space-based radionavigation system that provides reliable positioning, navigation, and timing services to civilian users on a continuous worldwide basis. The U.S. Air Force develops, maintains, and operates the space and control segments of the NAVSTAR GPS transmitter system. Ships use a variety of receivers (e.g. Trimble and Ashtech) to interpret the GPS signal and determine accurate latitude and longitude. |
Dataset-specific Instrument Name | |
Generic Instrument Name | Self-Contained Underwater Breathing Apparatus |
Generic Instrument Description | The self-contained underwater breathing apparatus or scuba diving system is the result of technological developments and innovations that began almost 300 years ago. Scuba diving is the most extensively used system for breathing underwater by recreational divers throughout the world and in various forms is also widely used to perform underwater work for military, scientific, and commercial purposes.
Reference: https://oceanexplorer.noaa.gov/technology/technical/technical.html |
Dataset-specific Instrument Name | dive slates, underwater data sheets, pencils, and erasers |
Generic Instrument Name | Underwater Writing Slate |
Generic Instrument Description | Underwater writing slates and pencils are used to transport pre-dive plans underwater, to record facts whilst underwater and to aid communication with other divers. |
NSF Award Abstract:
Rapid and extreme warming events such as El Niño and marine heatwaves have had ecological and economic impacts on nearshore marine ecosystems. These impacts include reductions in biomass and collapses in commercial fisheries. For many species, population booms and busts are controlled by shifts in reproduction and juvenile dispersal related to warmer temperatures and ocean circulation. However, how population fluctuations are shaped by interacting processes that control adult reproduction and larval survival remains unclear. Marine heatwaves often accompany major disruptions in ocean circulation, which can affect survival and the distribution of species that produce free-floating, planktonic larvae. As a result, species can be impacted directly by temperature effects on organismal reproduction and survival, and indirectly by shifts in ocean circulation that affect larval success. This project is examining how the joint effects of temperature and ocean circulation are controlling populations of purple sea urchins (Strongylocentrotus purpuratus). To address project objectives, the team is developing oceanographic models to predict dispersal of planktonic larvae in combination with controlled experiments on adult reproductive success. This project is advancing the understanding of how ecologically important species respond to ocean temperature and circulation, which are forecast to shift under future climate change scenarios. Broader impacts of the project include training of students and post-docs in STEM and educational outreach. Curriculum development and implementation is occurring in collaboration with existing K-12 outreach programs that focus on underserved communities and under-represented groups. The goal is to empower the next generation of scientists to use integrative approaches to predict ecological consequences of climate change.
Purple sea urchins are an ideal species for studying the coupled impacts of warming and ocean circulation on recruitment and survival given a wealth of ecological and organismal data. The species has a mapped genome, can be transported large distances as larvae by ocean currents, and larval abundances in California exhibit orders of magnitude variation with heatwaves and El Niño fluctuations. To quantify the processes that shape spatial and temporal variability in larval supply, researchers are applying a novel combination of biophysical modeling, experiments and statistical modeling of long-term, high-resolution data on larval settlement across the Southern California Bight (SCB). Research module 1 is quantifying spatial and temporal patterns of larval transport using a 3D-biophysical model of the SCB. The model is testing how interactions among historical changes in ocean circulation and temperature, larval life history, and larval behavioral traits affect variation in larval supply in space and time. Research module 2 is focused on how temperature could affect spatial and temporal variation in egg production. Experiments are characterizing reproductive thermal performance curves and quantifying how these vary among populations and organismal history. A novel assay is assessing epigenetic regulation of gene expression associated with performance curves. Finally, Module 3 will integrate mechanistic models from Modules 1 and 2 to statistically assess their ability to explain spatial and temporal trends in a nearly three-decade dataset of larval settlement from six sites in the SCB. This is one of the first studies that integrates models of larval transport, reproductive performance and settlement data to empirically test how physical and biological processes affect local recruitment patterns in complex marine meta-populations.
This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.
Funding Source | Award |
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NSF Division of Ocean Sciences (NSF OCE) |