Contributors | Affiliation | Role |
---|---|---|
Choy, C. Anela | University of California-San Diego Scripps (UCSD-SIO) | Co-Principal Investigator, Contact |
Schartup, Amina T. | University of California-San Diego Scripps (UCSD-SIO) | Co-Principal Investigator |
Chen, Rachel S. | University of California-San Diego Scripps (UCSD-SIO) | Student |
Paulson, Erik T. | University of California-San Diego Scripps (UCSD-SIO) | Student |
Soenen, Karen | Woods Hole Oceanographic Institution (WHOI BCO-DMO) | BCO-DMO Data Manager |
This dataset is referred to as "Dataset S2" in the supplementary material of Chen et al. The data were used in Figure 3.
Lancetfish Sample Collection:
Whole lancetfish (n = 69) were collected by fisheries observers of the National Oceanic and Atmospheric Administration (NOAA) Pacific Islands Region and West Coast Region Observer Programs from 2018 to 2023 between 20 – 40° N and 115 – 160° W in the central and eastern North Pacific Ocean. Observers sampled lancetfish from the Hawaii-based shallow- and deep-set pelagic longline fisheries. Lancetfish were frozen whole at sea and capture location was recorded. In the lab, specimens were defrosted, measured to the nearest mm (FL), and weighed whole to the nearest 0.1 g.
Dorsal muscle tissue from each lancetfish was sampled posterior to the operculum at the base of the dorsal fin insertion and anterior to the vent. Only white muscle tissue was sampled, and skin, bones, and cartilage were removed from white muscle tissues before analysis. Following dissection, all tissues were gently rinsed with Milli-Q to avoid contamination between samples, placed in pre-weighed Whirl-Paks, and weighed before and after drying to measure moisture content. Tissues were frozen at -80˚C before being freeze-dried and homogenized within the Whirl-Pak or using an electronic mill (IKA Tube Mill 100 Control). Milling vessels and tools were cleaned with 95% ethanol between samples.
Tuna THg Data:
We used published size and THg data from muscle tissues of bigeye tuna (Thunnus obesus) and yellowfin tuna (Thunnus albacares) collected in the central North Pacific (Brooks, 2004; Choy et al., 2009; Kaneko and Ralston, 2007; Kraepiel et al., 2003; Rivers et al., 1972; Thieleke, 1973; as compiled in Drevnick and Brooks, 2017), along with data from Choy (2013). Life history, metabolism, and diet information for bigeye and yellowfin tuna are available in the literature and were used to explain changes in THg burden with size.
Analytical Methods:
Total mercury (THg) concentrations were determined using a Nippon Instruments MA-3000 Direct Mercury Analyzer (DMA), which uses direct thermal decomposition, gold amalgamation, and cold vapor atomic absorption spectroscopy. For quality assurance and quality control, certified reference materials National Research Council Canada (NRCC) DORM-4 (fish protein) and NRCC TORT-3 (lobster hepatopancreas) were analyzed at the beginning and end of each analysis day. Around 20 mg of dried, homogenized tissues were weighed out for THg analysis, and replicate samples and DORM-4 were analyzed every seven samples. A blank boat was combusted after samples expected to have high THg concentrations to reduce any potential THg carryover to subsequent samples. The average variation of replicate measurements was 4.1%, and analyses of DORM-4 (average measured THg = 417 ± 26 ng Hg/g dry weight, n = 161) and TORT-3 (296 ± 15 ng Hg/g dry weight, n = 40) were within 1.2% and 1.5% of mean certified values, respectively. Only data collected between standard reference materials that were within the range of certified values were included in analyses.
All data processing was performed in R Statistical Software (version 4.3.2; R Core Team, 2023).
File |
---|
948928_v1_tuna.csv (Comma Separated Values (.csv), 44.97 KB) MD5:a32023aafb3b5a86e1dbe805ab155588 Primary data file for dataset ID 948928, version 1 |
Parameter | Description | Units |
specimen_id | unique identifier assigned to individual fish | unitless |
speciesID | scientific name | unitless |
date | fish collection date, in the format YYYY-MM | unitless |
latitude | fish collection location. Location data are provided in 5x5 degree cells. The coordinate represents the lower left corner of the 5x5 degree cell | degrees |
longitude | fish collection location. Location data are provided in 5x5 degree cells. The coordinate represents the lower left corner of the 5x5 degree cell | degrees |
length_cm | fork length of whole fish | centimeters (cm) |
weight_kg | wet weight of whole fish | kilograms (kg) |
wetTHg_ng_g | total mercury (THg) concentration in muscle tissue, reported as ng Hg/g on a wet weight basis (ng/g, ww) | nanograms per gram (ng/g) |
reference | abbreviated reference to data source | unitless |
Dataset-specific Instrument Name | Nippon Instruments MA-3000 Direct Mercury Analyzer |
Generic Instrument Name | Automated Mercury Analysis System |
Dataset-specific Description | Nippon Instruments MA-3000 Direct Mercury Analyzer: used to measure total mercury concentrations |
Generic Instrument Description | Examples include Tekran Models 2600 and 2700 |
Dataset-specific Instrument Name | IKA Tube Mill 100 Control |
Generic Instrument Name | Homogenizer |
Dataset-specific Description | IKA Tube Mill 100 Control: used to homogenize freeze-dried tissues |
Generic Instrument Description | A homogenizer is a piece of laboratory equipment used for the homogenization of various types of material, such as tissue, plant, food, soil, and many others. |
Dataset-specific Instrument Name | LABCONCO Benchtop Freeze Dryer |
Generic Instrument Name | Lyophilizer |
Dataset-specific Description | LABCONCO Benchtop Freeze Dryer: used to freeze dry tissues |
Generic Instrument Description | A lyophilizer, also known as freeze dryer or liofilizador, is a device that is used to freeze-dry material. |
The Scripps Center for Oceans and Human Health (SCOHH) is a five-year effort to advance the science and community engagement surrounding seafood pollutants, on a rapidly changing planet. The project brings together a multidisciplinary team of biomedical and oceanographic researchers with expertise in fish ecology, microbiology, marine chemistry, climate modeling, technology development, bioaccumulation, genomics, toxicology, and public health. The Center’s scientific goals and focus are guided by the needs of society, established through bidirectional community engagement, and led by a proven community engagement team. The proposed research program of SCOHH spans four main areas:
1. Climate change impacts on the human intake of seafood micronutrients and contaminants.
2. The marine microbiome as a source for the synthesis, transformation, and distribution of seafood contaminants.
3. Mechanisms of bioaccumulation and developmental toxicity of seafood pollutants.
4. Bidirectional public engagement and literacy surrounding seafood risks and benefits.
The outcomes of the SCOHH will inform policies, consumption guidelines, and individual decisions to lower risk and enhance greater benefits associated with seafood consumption. Internally, SCOHH will take deliberate measures to enhance equity, diversity, and inclusion in all aspects of its functioning, from the investigator team and graduate student/postdoctoral trainees to engagement with community partners. The Center is jointly supported by NSF’s Division of Ocean Sciences and by the National Institute for Environmental Health Sciences (NIEHS).
The central scientific theme of SCOHH is to advance knowledge of marine contaminants and seafood security. Natural and anthropogenic contaminants such as mercury, DDT, and PCBs drive seafood consumption advisories. Yet understanding of their sources, microbial transformations, toxicity, and potential for climate driven change remain incomplete. The SCOHH team will study and track the distribution of essential micronutrients and harmful contaminants in marine food webs to the three billion people who consume seafood globally, the roles that the marine microbiome play in their production and transport, and the developmental toxicity of seafood pollutants and their interactions with transporters that determine uptake and bioaccumulation.
This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.
Funding Source | Award |
---|---|
NSF Division of Ocean Sciences (NSF OCE) | |
National Institute of Environmental Health Sciences (NIEHS) |