Instrument: Spectrophotometer

Acronym:

Spectrophotometer

External Identifier:

» skos:broadMatch http://vocab.nerc.ac.uk/collection/L05/current/LAB20/

Description

An instrument used to measure the relative absorption of electromagnetic radiation of different wavelengths in the near infra-red, visible and ultraviolet wavebands by samples.

Datasets

Dataset Name	Brief Description
16S rRNA Sequences	16S rRNA sequence data from venting fluids and microbial mats at Axial Seamount, 2011.
2014 Antarctic krill feeding experiments	2014 krill growth
2014 Antarctic krill growth experiment	2014 krill growth
2015 Antarctic krill growth experiment 1	2015 krill growth expt 1
2015 Antarctic krill growth experiment 2	2015 krill growth expt 2
2017-2019_GOM_Meta_Discrete_submission
2_feeding-copepod chlorophyll uptake	Chlorophyll uptake by adult and nauplius copepod species on three phytoplankton species
3a_gut evacuation time	Experiment to test copepod gut evacuation time
3b_minimum readable gut fluorescence	Experiment to find minimum time for copepod gut fluorescence by plate reader method
3c_copepod sonication for chl extraction	Experiment to test whether sonication is needed for chlorophyll extraction from copepods
4b_min fluorescence thresholds	Pseudodiaptomus marinus gut minimum fluorescence thresholds
AE1812 Water column phosphate data	AE1812 water column phosphates
Anaerobic Peru Margin 2002	Sub-seafloor metatranscriptomes from anaerobic Peru Margin sediments collected on JOIDES Resolution, Leg 201.
AQMET Air quality and meteorological measurements
AR16_Water_Column	Phosphorus redox and water column phosphorus data
AT37-06 Sediment Geochemistry Summary
AT37-06 Sediment Geochemistry Summary
AT42-05 Sediment geochemistry	Sediment geochemistry AT42-05
AT42-05 Sediment geochemistry	Sediment geochemistry AT42-05
AT42-05 Water column chemistry	water column geochemistry AT42-05
AT42-05 Water column chemistry	water column geochemistry AT42-05
ATP and cell numbers T. weissflogii 2018	ATP and cell numbers T. weissflogii 2018
ATP and cell numbers T. weissflogii 2019	ATP and cell numbers T. weissflogii 2019
Auto-induction in Marine Diatoms	Results from laboratory experiments testing autoinduction in marine diatoms, Thalassiosira pseudonana and Phaeodactylum tricornutum
BATS/Hydrostation S: Iodine speciation and isotope ratio values
BATS/Hydrostation S: iodine speciation and superoxide concentration
Benthic flux	Benthic flux
Biochemistry of sponges
Biogenic and lithogenic silica in Southern Ocean marine suspended particulate material (0-1000 m)	Biogenic and lithogenic silica in Southern Ocean marine suspended particulate material (0-1000 m)
biogeochemistry microbiology	Cariaco basin biogeochemistry and microbiology
Bottle chemistry data from AT37-12
Bottle chemistry data from AT37-12
Bottle data and chemical analysis
Bottle data and chemical analysis
brooded coral larvae 1 - respiration	Brooded coral larval respiration (Cumbo, 2012)
brooded coral larvae 2 - respiration_photosyth_mortality	Respiration rates, photosynthetic efficiency, and mortality of brooded coral larval experiments, March 2011 & 2012 (Cumbo, 2013)
brooded coral larvae 3 - protein	Protein content of brooded coral larvae at high and ambient temperature and pCO2, March 2011 (Cumbo et al, JEMBE, 2013)
brooded coral larvae 3 - respiration and protein	Respiration and protein content of brooded coral larvae at high and ambient temperature and pCO2, March 2011 (Cumbo et al, JEMBE, 2013)
brooded coral larvae 3 - respiration raw data	Respiration of brooded coral larvae at high and ambient temperature and pCO2, March 2011 (Cumbo et al, JEMBE, 2013)
Calcification Comparison	Comparison of coral calcification response in Palau Porites coral to responses observed in ten other studies
Calcification Rates	Calcification rates of Porites corals collected from a naturally high-Ωar reef and a naturally low-Ωar reef incubated at three Ωar conditions
Carbonate chemistry	P17N Ocean Acidification Pteropod Study: Carbonate chemistry system (silicate, total alkalinity, total dissolved inorganic carbon, pH, oxygen) and hydrography samples
Carbonate chemistry	Carbonate chemistry for copepod experiments
Carbonate Chemistry 2014-2017 and 2018-2020	Carbonate chemistry in Mission Aransas Estuary (2014-2017, 2018-2020)
Carbonate Chemistry and CTD	Carbonate chemistry and CTD data along a North Pacific transect between Hawaii and Alaska
Carbonate_Chemistry_2017-2018	Effects of Hurricane Harvey in San Antonio Bay and Mission Aransas Estuary -Carbonate chemistry
Carpinteria Salt Marsh Elemental and Isotope Composition Data for Sediment and Biomass	Elemental and Isotope Composition Sediment and Biomass 2020
CDOM	CDOM
Characteristics of Silicon Reactive Sediment Pools
Cocos Ridge Porewater Data	Cocos Ridge Porewater Data
Cocos Ridge Porewater Data	Cocos Ridge Porewater Data
Cocos Ridge Solid Phase Data	Cocos Ridge Solid Phase Data
Cocos Ridge Water Column Data	Water column data - cocos ridge
Comeau 2017 Biogeosciences: calcification and chemistry
Controlled laboratory study using model organisms Micromonas commoda RCC 299 and Ruegeria pomeroyi DSS-3	picoeukaryote Micromonas commoda
coral - carbon oxygen boron isotopes	Coral carbon, oxygen, and boron isotopes; coral Sr/Ca, Mg/Ca, U/Ca, and Ba/Ca; coral chlorophyll-a.
Coral consumer and nutrients	Data from Shaver et al. 2017 (Ecology) on the effects of nutrient enrichment and predation on coral health and microbiomes.
Coral physiological and δ15N isotopic measurements.	Coral physiological and δ15N isotopic measurements
Coral physiological measurements	Montipora capitata and Porites compressa Physiological Measurements for Experimental Corals and Parent Colonies
coral-light expt.- protein	Protein measurements from coral-light experiments (Dufault, 2013, JEB)
Core Fluorescent Indicators Sept 2018
Core Fluorescent Indicators, March and November 2017
CRM pH	Extrapolated pH measurements of CRMs
CRM raw absorbance	Raw absorbance and R measurements of CRMs
Cryptic N: Seasonal STE Profiles	Biogeochemical data from porewater profiles within a shallow, sandy subterranean estuary (STE).
CTD	CTD sensor and nutrient measurements
CTD Manganese Speciation
Data set 4: TEP production and aggregation of Chaetoceros sp. as a function of light climate, pCO2, and temperature	Experiment with the diatom Chaetoceros sp. on the impact of temperature, light climate, and carbonate chemistry on TEP production and aggregation processes
delta 15N NH4	Detected 15N-labeled ammonium (NH4) in commercial 15N2 gas.
delta 15N NO3	Detected 15N-labeled nitrate (NO3) in commercial 15N2 gas.
DEPRECATED: Optical properties	DEPRECATED: Optical properties 2016 & 2017
Discrete C and N near Station P
Discrete Lab	Discrete Lab
Discrete Samples	DIC, TA, pH from nGOM cruise conducted in April 2017 and July 2017
DOC TDN Nutrients	TRACERS: DOC, TDN, Nutrients
Doliolid diet: zooplankton abundance	Zooplankton abundances
Doo et al. 2018, Coral Reefs - Mesocosm chemistry data	Seawater chemistry treatment conditions
Eastern Shore pore water analysis	Eastern Shore pore water analysis
Eastern Shore sediment core metadata	Eastern Shore, VA core metadata
Effects of protists on HBx predation	Population Changes
Emiliania huxleyi carbonate data	Carbonate data in experimental treatments of Emiliania huxleyi
Emiliania huxleyi Chl-a, POC, cell volumes	Chlorophyll-a, POC, and cell volume of E. huxleyi at 3 pCO2 levels
Emiliania huxleyi CN content	Carbon and nitrogen content of E. huxleyi at 3 pCO2 levels, 2011-2012
Emiliania huxleyi dilution calculations	Emiliania huxleyi growth rates under different pCO2 levels
Emiliania huxleyi DMSP	Cellular particulate DMSP from E. huxleyi at 3 pCO2 levels
Emiliania huxleyi growth rates	Emiliania huxleyi growth rates under different pCO2 levels
Emiliania huxleyi SEM	SEM based morphology of Emiliania huxleyi in 2011 and 2012
EN616 Discrete Data	EN616 Discrete Data
Fe(II) oxygen concentrations over time	Fe(II) Concentrations over time in iron oxidizing bacteria cultures.
Fe-Labeling Expt: E.coli and phage T4 or T5	Fe-Labeling Expt: E.coli and phage T4 or T5
Ferrozine assay data	Oxygen consumption rates/zero valent iron dissolution of FeOB with kanamycin addition - Ferrozine assay
Field Physiochemical Parameters and Nitrogen Specific Uptake Rates	Field Physiochemical Parameters and Nitrogen Specific Uptake Rates
Field Sampling: BLAMM HPLC data
Field Sampling: Hydrologic data
Fig2_copepod feeding on prey mixtures	Copepod fed phytoplankton mixtures
FK190211 Sediment Geochemistry
FK190211 Sediment Geochemistry
FK190211 water col geochem
FK190211 water col geochem
Geochemistry and Microscopy from Incubation Experiments	Geochemistry and Microscopy from Incubation Experiments
Geochemistry and radiotracer rates	Geochemistry and radiotracer rates
GO-SHIP Line I07N POM Concentrations	POM concentrations for carbon, nitrogen, and phosphorus from GO-SHIP Line I07N in 2018
GP15 pH Leg 1	Water column fish and bottle pH data
GP15 pH Leg 2	Water column fish and bottle pH data
GP16 Particle Composition	Size-fractionated major and minor particle composition and concentration.
GP16 Selenium iodine and arsenic species from Super GeoFish	Arsenate, Iodide, Selenium depth profiles collected from the Super-GeoFish
GP16 Selenium iodine and arsenic species profiles from bottle samples	Arsenate, Iodide, Selenium depth profiles collected from the Go-FLO bottles
Grazing experiment 2 and 3: pCO2	Carbonate chemistry data for low-high pCO2 acclimated E. huxleyi cultures
Grazing experiment 4: cell carbohydrates	Cellular carbohydrate data for low-high pCO2 acclimated Rhodomonas sp. cultures
Grazing experiment 4: pCO2	Carbonate chemistry data for low-high pCO2 acclimated Rhodomonas sp. cultures
Grazing experiment 5: cell carbohydrates	Cellular carbohydrate data for low-high pCO2 acclimated Rhodomonas sp. cultures
Grazing experiment 6: cell carbohydrates	Cellular carbohydrate data for low-high pCO2 acclimated Rhodomonas sp. cultures
Grazing experiment 6: cell lipids	Cellular lipid data for low-high pCO2 acclimated Rhodomonas sp. cultures
Grazing experiment 7: cell carbohydrates	Cellular carbohydrate data for low-high pCO2 acclimated Rhodomonas sp. cultures
Grazing experiment 7: cell lipids	Cellular lipid data for low-high pCO2 acclimated Rhodomonas sp. cultures
Groves Creek 'Omits	Metagenomic, metatranscriptomics and 16S rRNA gene sequence data from Groves Creek diel sampling
Gulf of Alaska DOM Optics
Gulf of Alaska DOM Optics
Gulf of Finland CDOM	Gulf of Finland chromophoric dissolved organic matter (CDOM) Naperian absorption coefficients
Gulf of Finland CDOM Absorption Coefficients	Gulf of Finland chromophoric dissolved organic matter (CDOM) Naperian absorption coefficients
Gulf of Finland CDOM Absorption Coefficients	Gulf of Finland chromophoric dissolved organic matter (CDOM) Naperian absorption coefficients
Gulf of Mexico pore water analysis	GoM pore water analysis
Gulf of Mexico sediment core metadata	GoM core metadata
Hood Canal - fluor and O2	fluorescence and oxygen from Hood Canal, Puget Sound, Washington, USA
Hood Canal - nutrients	Nutrient concentrations from Hood Canal, Puget Sound, Washington, USA
Host-Symbiont respiration relationship	Host-symbiont respiration related to symbiont density; anemones from Key Largo
HOT Particle Flux	Particle flux measurements from the Hawaii Ocean Time-Series (HOT)
HRR 18S full-length sequence BLAST results	HRR 18S full-length sequence BLAST results
HRR Metabarcoding	HRR metatranscriptome
Hudson Canyon DIC and pH	Radiocarbon DIC, DIC concentration, pH, and [CH4] in Hudson Canyon, northern US Atlantic Margin
Hurricane Matthew Geochemical Data	Water geochemistry from surface samples collected along the Neuse River, Neuse River Estuary, and Pamlico Sound in North Carolina between October and December 2016, following the passage of Hurricane Matthew
Hydrothermal vent porewater sulfate and sulfide - UNC	Guaymas sulfate & sulfide (UNC Chapel Hill)
IEP February and May 2017	Nutrient and nitrate isotope data from the southern Benguela upwelling system from February to August 2017
Incubation Experiments	Incubation Experiments
Inferno vent plume proteins-Av1	proteins from Inferno hydrothermal vent plume meta-proteome - replicate Av1
Inferno vent plume proteins-Av2	proteins from Inferno hydrothermal vent plume meta-proteome - replicate Av2
IO Phytoplankton	Phytoplankton diversity along with carbon and nitrogen uptake rates along the GO-SHIP IO9 repeat hydrography section of the Indian Ocean
Isotopes	Isotopes
Juan de Fuca Ridge Flank SSU rRNA gene sequences	SSU rRNA gene sequences from marine sediments, marine subseafloor, and deep seawater
Lau Basin and Loihi Seamount microbial mats	Metegenomic sequences from Lau Basin low temperature vents and Loihi Seamount.
LB_2012_Ship_Chl	Chlorophyll and pheopigments from filtered water samples
LED Photochemical Reactor Design and Validation	LED Photochemical Reactor Design and Validation
Line C13.5/A13.5 POM concentrations	Line C13.5/A13.5 POM concentrations
Line P18 POM concentrations	POM concentrations for carbon, nitrogen, phosphorus, and chemical oxygen demand
Macrophytes' amelioration of seawater acidity: Residence time and irradiance
March Incubation Phytoplankton Elemental Composition
MBRS Symbiodinium OTU	Symbiodinium OTU
MesoHux TEP
Microscopy Counts	Microscopy Counts
Moss Landing Phosphate Data	Phosphate time series data obtained from an autonomous programmable Flow Injection (pFI) analyzer at CeNVOOS Moss Landing Shore Station
Multitracers Biogenic Concentration Data	Multitracers Biogenic Concentration Data
N2	The measured quantity of 15N2 added to nitrate and ammonium solutions equilibrated with 15N2 gas.
NBST flux measurements
Neuse River Estuary WQ	Biological, chemical, and physical water quality indicators of the Neuse River.
Niskin bottle samples	Niskin bottle water samples and CTD measurements at water sample depths from the Hawaii Ocean Time-Series (HOT)
Nitrogen isotope fractionation for ammonium assimilation by marine phytoplankton
North Atlantic CDOM Absorption Coefficients	Chromophoric dissolved organic matter (CDOM) Napierian absorption coefficients for open ocean blue water samples from the North Atlantic subtropical gyre
North Atlantic CDOM Absorption Coefficients	Chromophoric dissolved organic matter (CDOM) Napierian absorption coefficients for open ocean blue water samples from the North Atlantic subtropical gyre
North Pond metagenome
OlyGrowth_Expt_2018_Chemistry	Olympia oysters Growth_Expt_2018_Chemistry
P. australis physiological data (CO2 experiments)
PANDORA Total column ozone	Time-synced air quality and meteorological data
pH	Spectrophotometric pH measured at 25 degrees C using the total hydrogen ion scale
pH	pH measured at the PICO time-series station from 2010 to 2012.
pH internal Consistency Experiment: Raw pH Data	Raw pH Data
Physiology of Montipora capitata and Porites compressa in response to marine heatwaves
Phytoplankton abundances	Phytoplankton cell counts at 3 pCO2 levels and 2 temperatures before and after 12 month conditioning
Phytoplankton abundances	Phytoplankton cell counts at 3 pCO2 levels and 2 temperatures before and after 12 month conditioning
Phytoplankton Nitrogen isotope fractionation	Nitrogen isotope fractionation for ammonium assimilation by marine phytoplankton
Phytoplankton phosphonate utilization
Pigment absorbance	Absorbance of coral Orbicella faveolata from Rosaria and Varadero reefs, 2016 & 2017
Pleurochrysis carterae 24 hour culture dynamics	Pleurochrysis carterae 24 hour culture dynamics
Pleurochrysis carterae growth cycle culture dynamics	Pleurochrysis carterae growth cycle (14 day) culture dynamics
Plocamium culture carbonate chemistry	Carbonate chemistry of Plocamium cartilagineum
Plocamium: pH drift	Carbonate chemistry over a time-course in pH drift
POM Concentrations	POM concentrations in the Eastern Indian Ocean (IO9N)
Pore Water Depth Profiles CL2015	Sediment pore water and solid phase geochemical analyses
Pore Water Depth Profiles CL2016	Sediment pore water and solid phase geochemical analyses from samples collected on R/V Savannah cruise SAV-16-16 at the Cape Lookout Continental Shelf and Slope during May 2016
Pore Water Depth Profiles GoM2017	Sediment pore water and solid phase geochemical analyses from samples collected on R/V Savannah cruise SAV-17-15 in the Gulf of Mexico during July and August 2017
PP Bioassay Experiments
P_Pools In Situ Experiments
Reef seawater biogeochemistry from the Jardines de la Reina reef-system
Response of Ulva to OA and NH4+	Response of Ulva to OA and NH4+
RR2004 Bottle Data	RR2004 Bottle Data
RR2311 NH4 and NO2	RR2311 NH4 and NO2
Salt marsh carbonate and organic carbon chemistry 2016	Discrete bottle sample measurements for carbonate chemistry, organic alkalinity and organic carbon from samples collected in Waquoit Bay and Vineyard Sound, MA in 2016.
Sample Accession Numbers	Project accession and library information on each experimental sample
Seawater nutrient/metabolite and flow cytometry metadata - Picoplankton incubation experiment 2020
Sediment Core Incubations - Sylt 2013
Sediment NO3 reduction rates, associated genes, and environmental data	Sediment NO3 reduction rates, associated genes, and environmental data
Sediment porewater and particulates of Louisiana Shelf	Sediment porewater and particulates on Louisiana Shelf Dec 2021-Aug 2022
Sediment trap fluxes
Series 1: Abiotic TEP Formation - DIC Perturbation	Series 1: Abiotic TEP Formation - DIC Perturbation
Series 1: Abiotic TEP Formation - TA Perturbation	Series 1: Abiotic TEP Formation - TA Perturbation
Series 1B: pH, DIC, nutrients	Series 1B: pH, DIC, nuts
Series 1B: photophysiology - computed	Series 1B: photophysiology
Series 2: CO2 Aggregation Experiment - Aggregate Sinking Velocity	Series 2: CO2 Aggregation Experiment - Aggregate Sinking Velocity
Series 2: CO2 Aggregation Experiment - Aggregate Size	Series 2: CO2 Aggregation Experiment - Aggregate Size
Series 2: CO2 Aggregation Experiment - BioChemical	Series 2: CO2 Aggregation Experiment - BioChemical
Series 2: CO2 Aggregation Experiment - Carbonate System	Series 2: CO2 Aggregation Experiment - Carbonate System
Series 2: CO2 Aggregation Experiment - General Information	Series 2: CO2 Aggregation Experiment - General Information
Series 2: CO2 Aggregation Experiment - pH Data	Series 2: CO2 Aggregation Experiment - pH Data
Series 2A: photophysiology - computed	Series 2A: photophysiology
Series 3A: cell abundance	Series 3A: cell abundance
Series 3A: cell size	Series 3A: cell size
Series 3A: pH	Series 3A: pH
Series 3A: photophysiology	Series 3A: photophysiology
Series 4: Aggregation of Thalassiosira weissflogii as a function of pCO2, temperature and bacteria: Aggregation Phase - Carbonate System + TEP	Series 4: Aggregation of Thalassiosira weissflogii as a function of pCO2, temperature and bacteria: Aggregation Phase - Carbonate System + TEP
Series 4: Aggregation of Thalassiosira weissflogii as a function of pCO2, temperature and bacteria: Aggregation Phase - Sinking Velocity	Series 4: Aggregation of Thalassiosira weissflogii as a function of pCO2, temperature and bacteria: Aggregation Phase - Sinking Velocity
Series 4A: cell abundance and size	Series 4A: cell abundance and size
Series 4A: pH	Series 4A: pH
Series 4A: photophysiology computed	Series 4A: photophysiology COMPUTED
Series 4A: photophysiology raw fluorescence	Series 4A: photophysiology RAW
Shipboard aerosol and rain sample nutrients and iron
Size Fractionated Chlorophyll Dataset
SoMMoS dataset	Southeastern Mediterranean Monthly cruise Series
SOTS Si profile	Programmable Flow Injection (pFI) silicate vertical profile data
squid CO2	CO2 analysis of water used for squid study
squid hatch rates	Experimental rearing of longfin squid under ocean acidification conditions
SRP Bioassay Experiments
Stable Isotopes in Reactive Si Pools
Strytan Hydrothermal Field: CH4, H2, CO, d13C	CH4, H2, CO, and d13C concentrations from the Strytan Hydrothermal Field
Strytan Hydrothermal Field: DIC	Dissolved inorganic carbon concentrations from the Strytan Hydrothermal Field
Strytan Hydrothermal Field: geochemistry	Geochemistry measurements from the Strytan Hydrothermal Field
Strytan Hydrothermal Field: organic acids	Organic acid concentrations from the Strytan Hydrothermal Field
Sulfide production rates Desulfovibrio hydrothermalis AM13	Effects of temp on biomass and sulfide production in Desulfovibrio hydrothermals AM13
Symbiont accession numbers	Accession numbers of symbiotic algae in coral
Symbiont type in recovering corals	symbiont type in recovering Porites divaricata corals
Synechococcus Batch Culture Sampling Data
Synechococcus elongatus CCMP1629 in nitrate-limited and nutrient-replete cultures	Synechococcus elongatus CCMP1629: NO3-limited and nutrient-replete cultures plus DNA analysis
Synthesis Product for Ocean Time Series (SPOTS)	Time-series data synthesis pilot product
T. rotula microbiome global sample	T. rotula microbiome global sample
Thalassiosira pseudonana CCMP1335 in nitrate-limited and nutrient-replete cultures	Thalassiosira pseudonana: NO3-limited and nutrient-replete cultures
Thalassiosira pseudonana cyclostat	Thalassiosira pseudonana cyclostat experimental results
Tide Pool Characteristics	Tide Pool Characteristics
trichodesmium_CNP_quotas	Cellular quotas of carbon, nitrogen, and phosphorus in T. erythraeum strain IMS101 under varying pCO2 and light conditions.
Upwelling Experiment Discrete Raw Measurements	Treatment and replicate IDs, as well as discrete raw measurements made for the upwelling experiments
Vitacopss: nutrients and microbial cell counts	Nutrients and picoplankton cell counts with nitrate and B vitamins from San Pedro Ocean Timeseries (SPOT), 2015
water and sediment geochemistry	Physical and geochemical measurements of water and sediments in Cape Fear River Estuary.
Water Column	Water Column
WaterChemistry_OA_Expt2017	WaterChemistry_OA_Expt2017
Weekly Calcification Rates	Weekly coral calcification rates in the CO2 manipulation experiment
[Deprecated] Thalassiosira pseudonanana in nitrate limited culture	Thalassiosira pseudonana clone 3H: nitrate limited culture data
[Deprecated] Thalassiosira pseudonanana in nitrate replete culture	Thalassiosira pseudonana clone 3H: nitrate replete culture data

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Instrument: Spectrophotometer