Dataset: Site locations and species sampled
Deployment: Apprill_2013

List of species that were sampled and locations of sampling sites.

Principal Investigator:

Amy Apprill (Woods Hole Oceanographic Institution, WHOI)

Contact:

Laura Gray (Woods Hole Oceanographic Institution, WHOI)

BCO-DMO Data Manager:

Hannah Ake (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Project:

Fundamental Coral-Microbial Associations (Coral Microbial Relationships)

Current State:

Final no updates expected

Version:

Final

Version Date:

2016-10-20

Data URL:

https://osprey.bco-dmo.org/dataset-deployment/662101/data

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Description

A list of the coral species sampled and the site locations for studies conducted on the partial SSU rRNA genes of bacteria and archaea from tissue samples produced using 515F/806RB primers. Samples were collected in the Federated States of Micronesia, Austrailia, and the Florida Keys.

Methods & Sampling

Dataset acquisition description

Coral collection and processing

Coral fragments were collected by a scuba diver using a hammer and chisel during field sampling trips to Kapangamarangi Atoll, Micronesia (November 2012), Florida Keys, U.S.A. (May 2013) and Magnetic Bay, Australia (November 2013). Fragments were stored in a cooler containing ice until they were flash frozen in liquid nitrogen. Fragments were obtained from 3 representative colonies of the following species: Porites lobata, Pocillopora verrucosa, Acropora humilis, Orbicella faveolata, Montastraea cavernosa, O. annularis, and Diploria strigosa. Fragments were shipped back to Woods Hole Oceanographic Institution and stored at -80 C until they were processed.

Data Processing Description

Dataset Processing Description

BCO-DMO Data Processing Notes:
-removed spaces and replaced with underscores
-reformatted column names to comply with BCO-DMO standards
-converted all lat/lons to decimal degrees

More information about this dataset deployment

Funding

Award Number	Funding Source
OCE-1233612	NSF Division of Ocean Sciences

Instruments

None available yet

Parameters

Supplied Name	Supplied description	Supplied Units	Standard Name
species	Species of coral sampled	unitless	species
collection_site	Geographic location where sampling occurred	unitless	site
lat	Latitude; N is positive	decimal degrees	lat
lon	Longitude; W is positive	decimal degrees	lon
depth	Depth where sampling occurred	meters	depth
colony_name	PI issued ID for the coral colony sampled	unitless	sample

Database

Contribute Data

Dataset: Site locations and species sampled
Deployment: Apprill_2013

Dataset acquisition description

Dataset Processing Description

Database

Contribute Data

Dataset: Site locations and species sampledDeployment: Apprill_2013

Dataset acquisition description

Dataset Processing Description

Dataset: Site locations and species sampled
Deployment: Apprill_2013