Dataset: Sulfide concentrations
Deployment: Girguis_2013

Sulfide concentrations from INSPIRE track 1.

Principal Investigator:

Peter Girguis (Harvard University)

Co-Principal Investigator:

David Clarke (Harvard University)

Contact:

Aude Picard (Harvard University)

BCO-DMO Data Manager:

Hannah Ake (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Project:

INSPIRE Track 1: Microbial Sulfur Metabolism and its Potential for Transforming the Growth of Epitaxial Solar Cell Absorbers (INSPIRE_Pyrite)

Current State:

Final no updates expected

Version:

Final

Version Date:

2017-03-17

Data URL:

https://osprey.bco-dmo.org/dataset-deployment/684617/data

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Description

Sulfide concentrations from INSPIRE track 1.

These data are associated with the paper: Picard A., et al., 2018

Methods & Sampling

Dataset acquisition description

Sulfide concentrations as a function of times in cultures of sulfate-reducing bacterium Desulfovibrio hydrothermalis AM13.

Data Processing Description

Dataset Processing Description

BCO-DMO Data Processing Notes:

- compiled multiple spreadsheets of sulfide concentrations into one table.
- replaced blank cells with nd.
- reformatted column names to comply with BCO-DMO standards.

More information about this dataset deployment

Funding

Award Number	Funding Source
OCE-1344241	NSF Division of Ocean Sciences

Instruments

Raman Microscope

Supplied Name: Microscope

Supplied Description:

Used to analyze cultures

Instrument Type

Generic Name: Raman Microscope

Generic Description:

The Raman microscope is a laser-based microscopic device used to perform Raman spectroscopy. The Raman microscope begins with a standard optical microscope, and adds an excitation laser, laser rejection filters, a spectrometer or monochromator, and an optical sensitive detector such as a charge-coupled device (CCD), or photomultiplier tube, (PMT). One example is the XploRA confocal Raman microscope (information from the manufacturer).

Parameters

Supplied Name	Supplied description	Supplied Units	Standard Name
experiment_type	Abiotic or biotic experiment	unitless	exp_type
time	Time in hours	hours	time_inc
sulfide_culture1	Sulfide concentrations as a function of time in cultures of AM13 with trace Fe(II)	micromolar (mM)	sulfide
sulfide_culture2	Sulfide concentrations as a function of time in cultures of AM13 with trace Fe(II)	micromolar (mM)	sulfide
sulfide_culture3	Sulfide concentrations as a function of time in cultures of AM13 with trace Fe(II)	micromolar (mM)	sulfide
sulfide_culture1_Fe	Sulfide concentrations as a function of time in AM13 cultures containing 4 mM Fe(II)	micromolar (mM)	sulfide
sulfide_culture2_Fe	Sulfide concentrations as a function of time in AM13 cultures containing 4 mM Fe(II)	micromolar (mM)	sulfide
sulfide_culture3_Fe	Sulfide concentrations as a function of time in AM13 cultures containing 4 mM Fe(II)	micromolar (mM)	sulfide
sulfide_culture4_Fe	Sulfide concentrations as a function of time in AM13 cultures containing 4 mM Fe(II)	micromolar (mM)	sulfide
sulfide_control1_slow	Sulfide added as a function of time in the medium	micromolar (mM)	sulfide
sulfide_control2_slow	Sulfide added as a function of time in the medium	micromolar (mM)	sulfide
culture_medium	Description of culture medium	unitless	sample_descrip

Database

Contribute Data

Dataset: Sulfide concentrations
Deployment: Girguis_2013

Dataset acquisition description

Dataset Processing Description

Database

Contribute Data

Dataset: Sulfide concentrationsDeployment: Girguis_2013

Dataset acquisition description

Dataset Processing Description

Dataset: Sulfide concentrations
Deployment: Girguis_2013