Dataset: T_pseudonana_growth

Name: Results from metal limitation experiments (Cu, Zn, Fe, Mn) conducted in the diatom T. pseudonana carried out in the Kustka and Allen labs at Rutgers in Newark, NJ from 2007-2011
Published: 2012-06-27
Keywords: oceans

Cite This Dataset

DOI:10.1575/1912/bco-dmo.3668.1

Project:

Expression profiling and functional genomics of a pennate diatom: Mechanisms of iron acquisition, stress acclimation, and recovery (Pennate Diatom Genomics)

Principal Investigator:

Andrew E. Allen (J. Craig Venter Institute, JCVI)

Contact:

Adam Kustka (Rutgers University)

BCO-DMO Data Manager:

Shannon Rauch (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Version:

Version Date:

2012-06-27

Restricted:

Validated:

Yes

Current State:

Final no updates expected

Results from metal limitation experiments (Cu, Zn, Fe, Mn) conducted in the diatom T. pseudonana carried out in the Kustka and Allen labs at Rutgers in Newark, NJ from 2007-2011

Abstract:

Results from metal limitation experiments (Cu, Zn, Fe, Mn) conducted in the diatom T. pseudonana carried out in the Kustka and Allen labs at Rutgers in Newark, NJ from 2007-2011

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Archival Copy

Version Date	Archive	Persistent Identifier (PID)	Date PID Issued
2012-06-27	Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)	10.1575/1912/bco-dmo.3668.1	2019-02-22

Description

Results of metal limitation experiments (Cu, Zn, Fe, Mn) conducted in the diatom T. pseudonana.

Data Processing Description

PI-provided parameter names were modified to conform with BCO-DMO conventions.

Data Files

File
tpseudonana_growth.csv (Comma Separated Values (.csv), 570 bytes) MD5:52bf38a9be366b5d846f46a3e44a24d8 Primary data file for dataset ID 3668

More Information about this dataset

Funding Sources

Funding Source	Award Number
NSF Division of Ocean Sciences	OCE-0727997

Deployments

Deployment	Synonyms	Start Date	Platform	Investigator
lab_Kustka_Allen		2007-09-01	Rutgers_Newark	Andrew E. Allen (Principal Investigator) Adam Kustka (Contact)	data info

Instruments

None available yet

Parameters

Date and time formats are described in python strftime() syntax.

Supplied Name	Supplied description	Supplied Units	Standard Name
sample	Vial sample numbers (unique ID's).	dimensionless	sample
metal	Metal of interest.	dimensionless	no_bcodmo_term
condition	Condition of the metal of interest under which the experiment was carried out.	dimensionless	no_bcodmo_term
growth_rate	Cell specific growth rate (per day), calculated as the slope of the linear regression between ln (cell density) versus time.	ln(cell density)/day	no_bcodmo_term
growth_rate_se	Standard error of growth_rate.	dimensionless	no_bcodmo_term
p_fe_prime	The negative log of fe_prime concentration (which is the summed concentration of all Fe species not complexed to EDTA). The additional effect of photochemistry of FeEDTA complexes on calculating fe_prime_log was considered. Originally notated as pFe'.	dimensionless	no_bcodmo_term
p_cu_prime	The negative log of Cu prime concentration (which is the summed concentration of all Cu species not complexed to either EDTA or TETA). Originally notated as pCu'.	dimensionless	no_bcodmo_term
p_mn_prime	The negative log of the Mn prime concentration (which is the summed concentration of all Mn species not complexed to EDTA). Originally notated as pMn'.	dimensionless	no_bcodmo_term
p_zn_prime	The negative log of the Zn prime concentration (which is the summed concentration of all Zn species not complexed to EDTA). Originally notated as pZn'.	dimensionless	no_bcodmo_term