Dataset: Copepod PIV videos

To achieve high resolution fluid velocity vectors in μPIV, high cell densities are required to maintain enough particles in such small fields of view. We used approximately 30,000-50,000 cells ml-1 at 40X and 2000-5000 cells ml-1 at 10X. While these cell densities are high, naturally occurring blooms of algae have been documented exceeding 500,000 cells ml-1 (Buskey et al., 2001).

The specific lenses used in this study were: A Nikon E Plan 10/0.25 160/0 LWD 10X Objective and a Nikon BD Plan 40/0.5 210/0 ELWD 40X microscope objective. The working distance of these objectives are 10.5 mm and 9.8 mm for 10X and 40X respectively. For the results presented in this paper, the 10X configuration positioned the lens at the front plane of the filming vessel. Therefore, when accounting for the glass thickness (1 mm), all copepods that were within the focal plane (appropriate data) were filmed at least 9.5 mm (approx. 10 body lengths) from any wall. For the 40X case (9.8 mm working distance), the total vessel thickness was 10 mm but when accounting for front and rear glass panel thickness, the water portion total 8 mm thick. By focusing at the front plane of the glass and moving the vessel back 5 mm with a micron-resolution translating stage, we were able to focus in the middle of the volume, making nauplii (~100 µm), 4 mm (40 body lengths) away from any wall.

The resolutions of the recorded images were 0.75 microns per pixel for the 40X application and 2.3 microns per pixel for the 10X applications. Based on the best available PIV of copepods using standard planar PIV methods (Kiørboe et al., 2010) resolution was roughly 10 microns per pixel. Thus, our 10X observations had ~5 times the resolution and our 40X observations had ~13 times the resolution. Calibration was achieved using a 2-point calibration from a recorded image of an in-focus stage micrometer scale (Olympus). This is similar to how traditional planar PIV can be calibrated and no additional considerations are necessary for brightfield PIV imaging. To achieve accurate near-body flows, the animal was manually masked prior to running cross-correlation algorithms. 

Supplemental Discussion:

Experimental results obtained in this manuscript used broad spectrum ‘white’ light from a fiber optic illuminator. Copepods are known to be positively phototactic to these bright point sources of light in the laboratory. While many previous experiments with copepods have used ‘white’ light in the past and there has been no evidence to suggest that escape and feeding kinematics are altered, this type of illumination should be avoided for certain types of experiments where directed swimming and/or copepod aggregation would be problematic. For these types of experiments, using near-IR light sources would be preferred. We have found through initial testing using an 850 nm wavelength, that brightfield μPIV results appear indistinguishable from ‘white’ light sources as long as the camera sensor does not filter this wavelength.

The issue of wall effects becomes an important consideration for μPIV applications given that even long working distance objective lenses typically resolve only a short distance, usually ≤ 1 cm, into the filming vessel. Using Zaret’s formula (Vogel, 1994) for determining when proximity to walls will be negligible for small, moving objects, we are able to demonstrate that our experimental setup is unlikely to have experienced significant wall effects. We applied the following formula:

y/l  > 20/Re

where y is distance to nearest wall and l is the length of object. Adult copepods were approximately 1 mm in length and filmed at10 mm from a wall surface. At the cruising speeds filmed, Re of the copepods are approximately 8. Thus, 10 > 2.5 and meets the requirement for wall effects being negligible. Similarly, N1 A. tonsa copepod nauplii are roughly 0.1 mm in length and filmed 4 mm away from the nearest wall. Swimming speeds resulted in a Re of 4. Thus, 40 > 5 and meets the requirement for wall effects being negligible.

References:

Buskey, E. J., Liu, H., Collumb, C. and Bersano, J. G. F. (2001) The decline and recovery of a persistent Texas brown tide algal bloom in the Laguna Madre (Texas, USA). Estuaries, 24, 337-346.

Kiørboe, T., Jiang, H. and Colin, S. P. (2010) Danger of zooplankton feeding: the fluid signal generated by ambush-feeding copepods. Proceedings of the Royal Society B: Biological Sciences, 277, 3229-3237.

Vogel, S. (1994) Life in moving fluids: the physical biology of flow. Vol., Princeton University Press.