Dataset: Hard Substrates Community Matrix, AT37-13 & AT42-03

Name: Matrix of taxon by sample for hard substrates collected by HOV Alvin during R/V Atlantis cruise AT37-13 and AT42-03 in the Pacific margin of Costa Rica in 2017 and 2018.
Published: 2021-03-16
Keywords: methane seep, deep sea, macrofauna, alvin, Costa Rica, continental slope, Tropical Pacific, d13C, d15N, hard substrate, biota, oceans

Cite This Dataset

DOI:10.26008/1912/bco-dmo.747699.2

Spatial Extent: N:9.1306 E:-84.2132 S:8.30702 W:-84.84155

Temporal Extent: 2017-05-21 - 2018-11-05

Project:

Collaborative research: Quantifying the biological, chemical, and physical linkages between chemosynthetic communities and the surrounding deep sea (Costa Rica Seeps)

Principal Investigator:

Lisa A. Levin (University of California-San Diego Scripps, UCSD-SIO)

Co-Principal Investigator:

Gregory Rouse (University of California-San Diego Scripps, UCSD-SIO)

Student:

Olívia Soares Pereira (University of California-San Diego Scripps, UCSD-SIO)

Contact:

Lisa A. Levin (University of California-San Diego Scripps, UCSD-SIO)

BCO-DMO Data Manager:

Karen Soenen (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Version:

Version Date:

2021-03-16

Restricted:

Validated:

Yes

Current State:

Final no updates expected

Matrix of taxon by sample for hard substrates collected by HOV Alvin during R/V Atlantis cruise AT37-13 and AT42-03 in the Pacific margin of Costa Rica in 2017 and 2018.

Abstract:

Matrix of taxon by sample for hard substrates collected by HOV Alvin during R/V Atlantis cruise AT37-13 and AT42-03 in the Pacific margin of Costa Rica in 2017 and 2018.

Expand/Collapse All

Archival Copy

Version Date	Archive	Persistent Identifier (PID)	Date PID Issued
2021-03-16	Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)	10.26008/1912/bco-dmo.747699.2	2021-04-22
2020-01-09	Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)	10.1575/1912/bco-dmo.747699.1	2020-01-14

Description

Matrix of taxon (columns) by sample (rows) for substrates collected during AT 37-13. Samples were collected with HOV Alvin.

Methods & Sampling

 In situ carbonate rocks were taken at sites with different seepage activity in 2017 (AT37-13) and 2018 (AT42-03) using HOV Alvin. These were used as control samples for two experiments: (1) Carbonate rocks, woods, and bones deployed for 7.4 years were collected across seepage gradients at Mound 12 using HOV Alvin (Colonization 7.4 years), and (2) Carbonate rocks were moved by the HOV to different seepage conditions with exposure for 17 months (Transplant 17 months).

All substrates were photographed intact upon recovery, and wrapped in aluminum foil to determine the surface area. Before preserving, the sample was kept cold and animals were picked to sample tissue for isotope analysis (see files “AT37-13 and AT42-03 Hard substrate isotopes” for isotopic data).

The remaining sample was sieved through 0.3 mm mesh, separating the sample in two fractions (a fine fraction with the meiofauna, and a coarser one with the macrofauna), both preserved in 96% Ethanol. In the laboratory, the samples were washed in distilled water and sorted, and the animals were identified to the lowest level possible, counted and preserved in 96% Ethanol.

Data Processing Description

Substrates were sorted and the fauna was identified to the lowest taxonomic level possible. Annelida and Mollusca, the most abundant groups, were identified at the family level. Crustacea was identified at the order or infraorder level, Cnidaria was identified at the order level, and Echinodermata was identified at the class level. The least abundant groups, Nemertea, Platyhelminthes and Pycnogonida, were identified to phylum.

Note: Not all samples were used for density analyses, thus some do not have surface area values.

BCO-DMO Processing:

Modified parameter names to comply with database requirements
Added sampling latitude and longitude
Changed , to ; to comply with database requirements

Data Files

File
hard_substrate_comm.csv (Comma Separated Values (.csv), 18.84 KB) MD5:4d276902ef093659ea85c929de27a921 Primary data file for dataset ID 747699

More Information about this dataset

Funding Sources

Funding Source	Award Number
NSF Division of Ocean Sciences	OCE-1634172

Deployments

Deployment	Start Date	Platform	Investigator
AT37-13	2017-05-20	R/V Atlantis	Erik E. Cordes (Chief Scientist)	data info
AT37-13_Alvin_Dives	2017-05-21	Alvin	Victoria J. Orphan (Principal Investigator)	data info
AT42-03	2018-10-17	R/V Atlantis	Erik E. Cordes (Chief Scientist)	data info
AT42-03_Alvin_Dives	2018-10-17	Alvin		data info

Instruments

None available yet

Parameters

Date and time formats are described in python strftime() syntax.

Supplied Name	Supplied description	Supplied Units	Standard Name
Cruise_ID	Cruise ID: AT37-13 or AT42-03	unitless	cruise_id
Site	Site name	unitless	sample_descrip
Alvin_Dive	Number of the Alivn dive from which the sample was collected	unitless	sample_descrip
Latitude	Latitude of sampling location	decimal degrees	lat
Longitude	Longitude of sampling location	decimal degrees	lon
Substrate	Alvin dive and substrate of sample	unitless	sample
Habitat	Habitat description	unitless	sample_descrip
Experiment	Experiment type	unitless	exp_type
Surface_Area	Surface area	unitless	surface_area
Oligochaeta	Number of individuals identified from taxon	unitless	count
Siboglinidae	Number of individuals identified from taxon	unitless	count
Serpulidae	Number of individuals identified from taxon	unitless	count
Polynoidae	Number of individuals identified from taxon	unitless	count
Hesionidae	Number of individuals identified from taxon	unitless	count
Amphinomidae	Number of individuals identified from taxon	unitless	count
Ampharetidae	Number of individuals identified from taxon	unitless	count
Sabellidae	Number of individuals identified from taxon	unitless	count
Dorvilleidae	Number of individuals identified from taxon	unitless	count
Lumbrineridae	Number of individuals identified from taxon	unitless	count
Phyllodocidae	Number of individuals identified from taxon	unitless	count
Chrysopetallidae	Number of individuals identified from taxon	unitless	count
Cirratulidae	Number of individuals identified from taxon	unitless	count
Trichobranchidae	Number of individuals identified from taxon	unitless	count
Paraonidae	Number of individuals identified from taxon	unitless	count
Lacydoniidae	Number of individuals identified from taxon	unitless	count
Maldanidae	Number of individuals identified from taxon	unitless	count
Magelonidae	Number of individuals identified from taxon	unitless	count
Flabelligeridae	Number of individuals identified from taxon	unitless	count
Syllidae	Number of individuals identified from taxon	unitless	count
Spionidae	Number of individuals identified from taxon	unitless	count
Cossuridae	Number of individuals identified from taxon	unitless	count
Pisionidae	Number of individuals identified from taxon	unitless	count
Nereididae	Number of individuals identified from taxon	unitless	count
Capitellidae	Number of individuals identified from taxon	unitless	count
Orbiniidae	Number of individuals identified from taxon	unitless	count
Pilargiidae	Number of individuals identified from taxon	unitless	count
Terebellidae	Number of individuals identified from taxon	unitless	count
Onuphidae	Number of individuals identified from taxon	unitless	count
Eunicidae	Number of individuals identified from taxon	unitless	count
Chaetopteridae	Number of individuals identified from taxon	unitless	count
Sigalionidae	Number of individuals identified from taxon	unitless	count
Opheliidae	Number of individuals identified from taxon	unitless	count
Arenicolidae	Number of individuals identified from taxon	unitless	count
Goniadidae	Number of individuals identified from taxon	unitless	count
Nephtyidae	Number of individuals identified from taxon	unitless	count
Actiniaria	Number of individuals identified from taxon	unitless	count
Hydroidolina	Number of individuals identified from taxon	unitless	count
Alcyonacea	Number of individuals identified from taxon	unitless	count
Trombidiformes	Number of individuals identified from taxon	unitless	count
Amphipoda	Number of individuals identified from taxon	unitless	count
Anomura	Number of individuals identified from taxon	unitless	count
Brachyura	Number of individuals identified from taxon	unitless	count
Cumacea	Number of individuals identified from taxon	unitless	count
Isopoda	Number of individuals identified from taxon	unitless	count
Tanaidacea	Number of individuals identified from taxon	unitless	count
Ostracoda	Number of individuals identified from taxon	unitless	count
Caridea	Number of individuals identified from taxon	unitless	count
Sessilia	Number of individuals identified from taxon	unitless	count
Mysidacea	Number of individuals identified from taxon	unitless	count
Asteroidea	Number of individuals identified from taxon	unitless	count
Ophiuroidea	Number of individuals identified from taxon	unitless	count
Holothuroidea	Number of individuals identified from taxon	unitless	count
Aplacophora	Number of individuals identified from taxon	unitless	count
Nuculanidae	Number of individuals identified from taxon	unitless	count
Juvenile	Number of individuals identified from taxon	unitless	count
Xylophagaidae	Number of individuals identified from taxon	unitless	count
Cuspidariidae	Number of individuals identified from taxon	unitless	count
Mytilidae	Number of individuals identified from taxon	unitless	count
Teredinidae	Number of individuals identified from taxon	unitless	count
Vesicomyidae	Number of individuals identified from taxon	unitless	count
Solemyidae	Number of individuals identified from taxon	unitless	count
Pyramidellidae	Number of individuals identified from taxon	unitless	count
Eucyclidae	Number of individuals identified from taxon	unitless	count
Seguenziidae	Number of individuals identified from taxon	unitless	count
Skeneidae	Number of individuals identified from taxon	unitless	count
Cataegidae	Number of individuals identified from taxon	unitless	count
Hyalogyniridae	Number of individuals identified from taxon	unitless	count
Provannidae	Number of individuals identified from taxon	unitless	count
Lepetodrilidae	Number of individuals identified from taxon	unitless	count
Cocculinidae	Number of individuals identified from taxon	unitless	count
Neolepetopsidae	Number of individuals identified from taxon	unitless	count
Pyropeltidae	Number of individuals identified from taxon	unitless	count
Polyplacophora	Number of individuals identified from taxon	unitless	count
Nemertea	Number of individuals identified from taxon	unitless	count
Platyhelminthes	Number of individuals identified from taxon	unitless	count
Pycnogonida	Number of individuals identified from taxon	unitless	count

Status message

Database

Contribute Data

Dataset: Hard Substrates Community Matrix, AT37-13 & AT42-03