Instrument: Mass Spectrometer

Acronym:

Mass Spec

External Identifier:

» skos:broadMatch http://vocab.nerc.ac.uk/collection/L05/current/LAB16/

Description

General term for instruments used to measure the mass-to-charge ratio of ions; generally used to find the composition of a sample by generating a mass spectrum representing the masses of sample components.

Datasets

Dataset Name	Brief Description
A. pisonii: egg fatty acids	Egg fatty acid concentration of A. pisonii from three habitats
AA-CSIA Bradley	Amino acid compound specific nitrogen isotopic analysis (AA-CSIA) data from Bradley et al. 2015.
AE1913 Peptide Spectral Counts
AE1913 Protein Identification FASTA
AE1913 Protein Spectral Counts
Alteromonas macleodii MIT1002 replete proteome	Alteromonas macleodii MIT1002 replete proteome
Amino Acid d15N transfer	Phytoplankton and grazers grown in lab chemostats
Amino Acid Enantiomeric Ratios	Amino acid enantiomeric ratios (D/L) of high and low molecular weight (HMW, LMW) DOM collected from the North Pacific Subtropical Gyre and Central North Atlantic
Arctic Nitrogen Fixation Rates	Size fractioned nitrogen fixation rates
Atlantic croaker otolith geochemical concentrations
Azotobacter_SiderophoreConcentrations
B. elegans cold water coral lab culture: starvation trial
Baltic GasEx (2018) Helium isotopes and Neon	Baltic GasEx Helium isotopes and Neon
Baltic GasEx 1 SF6 and Helium	Baltic GasEx SF6 and He from tracer release experiment
BB2-AT2 Cytosolic Metallome
BB2-AT2 Metalloproteome Proteins
Boron and Calcium in mussel larvae	Boron and Calcium geochemistry of mussel larvae bulk material
Boron and Calcium in mussel larvae - mass spec headers	Mass spec headers for Boron and Calcium geochemistry of mussel larvae bulk material
Boron isotopes and trace elements	Boron isotopes and trace elements experimental data of tropical corals
Bulk and CSIA-AA stable isotopes in sinking POM and proteinaceous deep-sea coral skeletal material
Carbon chemistry from CTD - Bottle	Carbon chemistry (TCO2, TALK, POC, PON, dC13_POM, dN15_POM) from CTD bottles
Carbonate chemistry and isotopes	Dissolved inorganic carbon (DIC), del13C-DIC, and total alkalinity (TA)
Clear Lake 800-yr reconstruction	Record of d2H of dinosterol variability in down core lake sediments
cluster analysis - Carbonate Organic Matrix proteins	Carbonate Organic Matrix (COM) proteins from coral, mollusk, and sea urchin.
cluster analysis - cross-phyla protein clustering	Cross-phyla clustering of non-redundant carbonate organic matrix proteins grouped by hierarchical clustering.
CO2-stressed diatom proteome	Raw mass spec data from a diatom (T. pseudonana) grown under CO2-replete & CO2-stressed conditions. Data will be made available upon request.
Coccolith dissolution experiment
ContinuousNobleGasData
ContinuousNobleGasData
coral - energy reserves	Coral energy reserves; calcification, chlorophyll a, stable carbon isotopes, stable nitrogen isotopes
Coral iCA Activity	Internal carbonic anhydrase activity in three species of coral from the Florida Keys
Coral Isotope Ratios from Mini Core	Isotopic ratios d18O and d13C from coral mini core samples
CSIA-AA comparison between live polyps and outer proteinaceous skeletal material in three (3) taxons of deep-sea corals
CTD NPP and nutrients
Data Dependent Acquisition Proteomics	Emiliania Huxleyi exposed to 3 doses of HHQ
Data Independent Acquisition Proteomics	Emiliania Huxleyi exposed to 4 treatments of HHQ
delta-13C and delta-18O	DIC and alkalinity from Globobulimina dual stressor experiment
Diatom Matrix Mass Spectrometry	MetaboLights accessions: MS samples
Diatom metabolites
Diel proteomes Trichodesmium IMS101
Dinitrogen fixation rates and nifH community structure	Dinitrogen fixation (N2fix) rates and nifH community structure from in situ 15N2 Gas Array
Discrete O2 Ar	Discrete O2 Ar
Discrete O2 Ar	Discrete O2 Ar
DiscreteNobleGasData
Dissolved Fe conc and isotopes - UK_GA10	Dissolved (0.2 micron filtered (<75 m depth) or 0.4 micron (>75 m depth) Fe stable isotope ratios and concentrations
dissolved O2	Depth profiles of dissolved O2 saturation and isotopologues
Dissolved phenols	Concentrations of dissolved organic carbon and phenols from for Polarstern cruise PS 94-ARK-XXIX/3
Dissolved Th/Pa - IC1/IC2	Seawater dissolved 232Thorium, 230Thorium and 231Protactinium in the subtropical North Pacific
Dissolved Th/Pa - SO-202	Depth profiles of seawater dissolved 232Th, 230Th, and 231Pa, NW Pacific
Diurnal GOP	Diurnal GOP
Domoic acid assimilation in copepods
Dorado 2014: Solid phase chemistry from gravity cores	Solid phase chemistry from gravity cores
Dorado 2014: Solid phase chemistry from push cores	Solid phase chemistry from push cores
Echinoid OA and stable isotopes: Echinoid stable isotopes
Extracellular reef seawater metabolites from the Jardines de la Reina reef-system
Extracellular reef seawater metabolites from the Jardines de la Reina reef-system
Field domoic acid and copepods
Field Physiochemical Parameters and Nitrogen Specific Uptake Rates	Field Physiochemical Parameters and Nitrogen Specific Uptake Rates
Foram B-Ca and Mg-Ca	B:Ca and Mg:Ca isotopes in foraminifera from sediment cores
Global Noble Gases	Noble gas and N2/Ar (with associated CTD) data from 93 different cruises spanning the globe
GP15 Heavy Noble Gas Concentrations Leg 1	GP15 Heavy Noble Gas Concentrations Leg 1
GP15 Heavy Noble Gas Concentrations Leg 2	GP15 Heavy Noble Gas Concentrations Leg 2
GP15 Iron Ligands in Particles	GEOTRACES GP15 Iron Ligands in Particles
GP15 Iron Ligands in Seawater	GEOTRACES GP15 Iron Ligands in Seawater
GP16 d13C-DIC	The 13C/12C stable carbon isotopic ratio of the dissolved inorganic carbon from samples collected on the GEOTRACES EPZT cruise
GP16 Helium Isotopes and Noble Gas Concentrations	Helium Isotopes and Noble Gas Concentrations from GEOTRACES 2013 Eastern Pacific Zonal Transect
GP16 Particle Composition	Size-fractionated major and minor particle composition and concentration.
GP16 Particulate Elements Geo-FISH	Trace element concentrations in suspended particles collected from the GeoFISH
GP16 Particulate Elements Go-Flo Bottle	Trace element concentrations in suspended particles collected from GO-Flo bottles
GP16 Polonium-210 and Lead-210 particulate	Particulate Po-210 and Pb-210 data from US GEOTRACES East Pacific Zonal Transect-2013
GP16 Trace metal ligands	Spectral data from high pressure liquid chromatography coupled to mass spectrometry
GP16 Trace metal ligands	Spectral data from high pressure liquid chromatography coupled to mass spectrometry
GP16 Tritium	Tritium Concentrations from GEOTRACES 2013 Eastern Pacific Zonal Transect
GT10 - HeNe_dups	Helium and Neon duplicates from station 1 of KN199-04 (GT10) cruise.
GT10-11 - Cu Speciation	Total dissolved copper and estimates of free Cu2+, ligand concentrations, and conditional stability constants
GT10-11 - Dissolved and Particulate Th and Pa	Depth profiles of seawater dissolved and small and large particulate 232Th, 230Th, and 231Pa
GT10-11 - Dissolved Fe Zn Cd conc and isotopes	Dissolved Fe, Zn and Cd concentrations and isotope ratios
GT10-11 - HeNe	Helium, Neon, and Helium-isotope concentrations from KN199-04 (GT10) and KN204-01 (GT11) cruises.
GT10-11 - Neodymium - LDEO	seawater Nd isotopes and concentrations from the US-GEOTRACES North Atlantic zonal transect (NAZT)
GT10-11 - Neodymium - UH	seawater Nd isotopes and concentrations from the US-GEOTRACES North Atlantic zonal transect (NAZT)
GT10-11 - Neodymium - USC	seawater Nd isotopes and concentrations from the US-GEOTRACES North Atlantic zonal transect (NAZT)
GT10-11 - Particulate Th and Pa	Depth profiles of seawater suspended dissolved and particulate 232Th, 230Th, and 231Pa
GT10-11 - Particulate trace elements	Trace element concentrations in particles
GT10-11 - Trace Element Profiles	Trace element profiles from GT-10 and GT-11
GT10-11 - Trace Element References	SAFe and GEOTRACES trace element references
GT10-11 - Tritium	Tritium concentration from KN199-04 (GT10) and KN204-01 (GT11) cruises.
Guaymas Basin 2014 Methane	Porewater methane concentrations from sediment cores collected on the Guaymas Basin Ridge flanks and the Sonora Margin in 2014
Gulf of Mexico NO3 isotopes
Gulf of Mexico particulate organic matter and isotopes
Hotmix 2014 Retinoids	Retinoid data from Mediterranean cruise, Hotmix 2014.
Hydrocarbons in porewater	Guaymas pushcore porewater hydrocarbons
Hydrocarbons in sediment	Guaymas pushcore sediment hydrocarbons
Impact of OA on coral clumped isotopes
Incubation Data	Results of incubation experiments
Inferno vent plume proteins-Av1	proteins from Inferno hydrothermal vent plume meta-proteome - replicate Av1
Inferno vent plume proteins-Av2	proteins from Inferno hydrothermal vent plume meta-proteome - replicate Av2
Interlab Study 2021
Intracellular metabolites
IO Phytoplankton	Phytoplankton diversity along with carbon and nitrogen uptake rates along the GO-SHIP IO9 repeat hydrography section of the Indian Ocean
IODP360 - Archaeal and bacterial lipid biomarkers
IODP360 Figure 1	Relative abundances of the diether lipid archaeol and tetraether lipids with zero, one, two and three rings and crenarchaeol from rock samples at different depths.
IODP360 Figure 3	Diversity of archaeal intact polar lipids (IPLs) and changes in relative abundance of bacterial dietherglycerol lipids (DEGs) within the selected 11 samples at different depths
IODP360 Figure 6	Archaeal core lipids, intact polar lipids (IPLs), and bacterial dietherglycerol (DEG) lipids in the drilling mud, subsampled from whole round core 29R3 and selected rock samples.
Isotopes in methane in natural waters of Alaska	Isotopes in methane in natural waters of Alaska
Isotopes in methane in natural waters of Alaska	Isotopes in methane in natural waters of Alaska
Juan de Fuca Ridge Flank SSU rRNA gene sequences	SSU rRNA gene sequences from marine sediments, marine subseafloor, and deep seawater
Larval oyster laboratory experiments	Oyster larvae elemental ratio experiments
Light limited growth rate
Macroalgal carbon and nitrogen content
Mass spec proteomics data	Proteomics on diatom response to allelopathy from red tide dinoflagellate (Karenia brevis).
Mass spectrometry lipidomics data	MS-based lipidomics on diatom response to allelopathic chemicals from the red tide dinoflagellate (Karenia brevis)
Mass spectrometry metabolomics data	MS-based polar metabolomics on diatom response to allelopathic chemicals from red tide dinoflagellate (Karenia brevis)
Mass spectrometry proteomics data
Metal quotas of Line P diatoms in added Zn and Co incubation studies
Metaproteomics of Bering Strait Ship-board 10 day bacterial Incubations.
MOSAIC Expedition Ice Core Be7	MOSAIC Expedition Ice Core Be7
MOSAIC Snow and Frost Flower Be7	MOSAIC Snow and Frost Flower Be7
MS metabolomics of blue crab urine	Raw LCMS data files from study of metabolomics of blue crab urine inducing fear in prey
Mussel larvae mass spec analyses: spots and lines	Elemental analysis of mussel larvae bulk material
Mussel larvae mass spec headers: spots and lines	Elemental analysis of mussel larvae bulk material
Mytilus Elemental Fingerprints
N2 excess and N species isotopic composition	Vertical profiles from the Mexican OMZ of N2 gas concentrations in excess of equilibrium values along with the isotopic composition of total N2, NO3- and NO2-
NBP1608 TMs: Incubation 1
NBP1608 TMs: Incubation 2
NBP1608 TMs: Incubation 3
NBP1608 TMs: stations
Nitrate Uptake	15NO3 uptake, 24-hour in situ incubations.
Nmarina global proteome	Nmarina global proteome
Nmarina targeted proteome	Nmarina targeted proteome
Noble gas observations and model runs	Noble gas observations for ECCO model and Matlab files
Nutrient concentrations and stable isotope values for groundwater
Nutrients and Targeted Proteomics	Macronutrients from the trace metal rosette and targeted metaproteomics analyzed by triple quadrupole mass spectrometry calibrated with stable isotope labeled peptides.
nutrients_particulate_Ant1	Particulate nutrients from temp and iron experiments on Antarctic phyto and microzooplankton
nutrients_particulate_Ant2	Phosphorus and Biogenic Silica from temp and light experiments on Antarctic phytoplankton and microzooplankton.
O2/Ar and triple oxygen isotopes discrete samples	Dissolved gas O2/Ar and triple oxygen isotope discrete samples
OFP Lipid Flux	Lipid flux data of the OFP sediment trap time-series in the N Sargasso Sea (Sep-Dec 2016).
OFP Primary Particle Flux	Primary particle flux data (500, 1500, and 3200m depths) of the OFP sediment trap time-series in the northern Sargasso Sea
Organic carbon content
Organic polymers and domoic acid
OSNAP Noble Gases 2016	OSNAP Noble Gases 2016
Oyster spat elemental ratios	Elemental ratio data from Mass Spec analysis of newly settled oyster spat
Oyster spat site information	Site information
P. australis physiological data (Cluster experiments)
P. australis physiological data (N:P ratio experiments)
P. australis physiological data (temperature experiments)
P. tricornutum diel cycle
Pacific Nitrite Oxidoreductase
Pacific oyster cohort tracking data - Biochemistry	Biochemistry of 3 pacific oyster cohorts from Whiskey Creek Hatchery.
Pacific oyster cohort tracking data - Carbonate Chem	Carbonate chemistry of 3 pacific oyster cohorts from Whiskey Creek Hatchery.
Pacific oyster cohort tracking data - Stable Isotopes	Stable isotopes of 3 pacific oyster cohorts from Whiskey Creek Hatchery.
Particulate vitamin B12 profiles	Particulate vitamin B12 profiles from cruise KM1314, Aug. 8 - Sept. 4, 2013 in the northern Pacific
PETM foram geochem	Boron isotopes in foraminifera from sediment cores and 2 pH scenarios
PNPC and Nitrogen Uptake Rates	Particulate Carbon and Nitrogen data from CTD casts
POC	Particulate organic carbon from the formation fluids recovered from the CORKs installed at the North Pond in 2012
Prochlorococcus inorganic carbon fluxes	Inorganic carbon fluxes of Prochlorococcus MED4 cultured under high and low CO2 concentrations
Proteomic data of dilution series of bacteria and diatoms using MS (DDA).
Proteomic data of dilution series of bacteria and diatoms using MS.
Proteomics Colwellia psychrerythraea strain 34H at subzero temperatures.
Pseudo-nitzschia counts, nutrients and more	Pseudo-nitzschia counts, nutrients and more
Pseudo-nitzschia spp. presence-absence and environmental data
Pseudo-nitzschia spp. presence-absence and environmental data
PTR ToF-MS peak tables: Phaeodactylum tricornutum and cocultures
PTR ToF-MS peak tables: Synechococcus WH8102
Raw LC-MS/MS	Raw LC-MS/MS data with list of identified peptides in xml format.
Raw LC-MS/MS and DNA	Raw LC-MS/MS data, with list of identified peptides, and DNA sequences.
Reef biogeochemistry, metabolomics, and metagenomics	Reef biogeochemistry, metabolomics, and metagenomics
Ross Sea metaproteome FASTA files
Ross Sea metaproteome peptide spectral counts
Ross Sea metaproteome protein spectral counts
Rpalustris_SiderophoreConcentrations
Ruergeria pomeroyi DSS-3 replete proteome	Ruergeria pomeroyi DSS-3 replete proteome
San Francisco Bay Transects	Vascular plant and microbial biomarkers of dissolved organic matter from San Francisco Bay transects
Sargassum Puerto Rico 2018: FTMS
SCCS Single Cell N2 Fixation Measurements	Single cell N2 fixation measurements
Scrippsiella Metabolic Fingerprints
Sediment Core Incubations - Sylt 2013
Sediment PLFA concentrations	Raw concentrations of individual PLFA compounds.
Sediment PLFA isotope data	Sediment PLFA isotope values.
Sediment trap time-series: carbon and nitrogen isotopes	Carbon and nitrogen isotopes: sediment trap time-series
Shipboard bioassay experiments
Shotgun Metaproteomics of Bering Strait surface water and Chukchi Sea bottom water.
Shotgun Proteomics of Bering Sea algal incubations.
Shotgun Proteomics of Pseudonitzschia multiseries Multi stress incubations.
Single cell mass spec Cell-Cell interaction
Single cell mass spec lipid double bonds
Single cell mass spec metabolites
Skeletal Organic Matrix Proteins	LC-MS/MS sequenced proteins extracted from Stylophora pistillata skeleton.
South Atlantic Bight nitro cruises 2014	Environmental data, nitrifier abundance, ammonia oxidation rates from the South Atlantic Bight
Speciation of Iodine-129 and Iodine-127	Speciation of I129 and I127 from Fukushima water samples
SPOT Cobalamins	Quantification of different chemical forms of cobalamin from SPOT cruises in 2017
SPOT Vitamins	Vitamin and methionine quantifications from SPOT cruises during different months
SPOT- Retinoid
Stable isotopic composition of McMurdo Benthos	Stable isotopic composition of McMurdo Benthos
Substrate-specific metabolic responses of model marine bacteria using proteomics
Sulfonates in plankton cultures
Targeted metabolite abundances: dissolved	Targeted dissolved metabolite abundances
Targeted metabolite abundances: particulate	Targeted particulate metabolite abundances
Th-234 activity	Water column Th-234 activity determined using a 4-L technique.
Thaps_57Fe_distribution	Fe limited diatoms were supplied with excess 57Fe and the new Fe was tracked to better understand storage mechanisms.
Thermal Stress Experiment: Targeted Metabolites	Thermal Stress Experiment: Targeted Metabolites
Thermal Stress Experiment: Targeted Metabolites	Thermal Stress Experiment: Targeted Metabolites
Thermal Stress Experiment: Untargeted Metabolites	Thermal Stress Experiment: Untargeted Metabolites
Thermal Stress Experiment: Untargeted Metabolites	Thermal Stress Experiment: Untargeted Metabolites
Trace Metal Concentrations in Seawater	Trace Metal Concentrations in Seawater
Trichodesmium field metaproteomes - peptide spectral counts
Trichodesmium field metaproteomes - protein spectral counts
Trichodesmium field metaproteomes - protein spectral counts in alternative format
Trichodesmium field metaproteomes - sequence fasta
Trichodesmium field metaproteomes - single colony metaproteomes
Trichodesmium proteomes and Hi CO2 adaptation	Trichodesmium nutrient-limited proteomes in 380 and 750 uatm CO2
UCYN-A Host activity	UCYN-A/Host activity in DIN-rich waters
Underway O2 Ar	Underway O2 Ar
Vharveyi_SiderophoreConcentrations
Vharveyi_Spectra
vitamin B dissolved - Hotmix 2014	Dissolved B vitamins from Hotmix expedition, 2014
vitamin B particulate - Hotmix 2014	Particulate B vitamins from Hotmix expedition, 2014
vitamin B particulate - Vitacopss 2015	Particulate B vitamins from Vitacopss, San Pedro Ocean Timeseries (SPOT), 2015
Water column analytical data from Chile Triple Junction	Water column analytical data from Chile Triple Junction
water_samples	Depth profiles of oceanographic parameters from Chesapeake Bay in Spring and Summer of 2010-2011
Year 1 orbitrap MZML files	Raw proteome mass spectrometry data (.mzML files) herring embryo's 2022
YOY chem	Young-of-the-year Baltic flounder otolith chemistry analysis from 2014 to 2017 at Baltic Sea sites in Sweden and Latvia.
Zooplankton bulk isotopes
Zooplankton CSIA-AA
Zooplankton/phytoplankton CSIA-AA	15N AA from phytoplankton, microzooplankton and Calanus pacificus

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Instrument: Mass Spectrometer