Parameter: seq_descrip

Short Description:

seq_descrip

Short Name:

seq_descrip

Official Name:

sequencing description

External Identifier:

» skos:closeMatch http://purl.obolibrary.org/obo/OBI_0003069

Description

Term describing the methodology and description of sequencing (often used for NCBI run descriptions: library selection, strategy, source, ...).

Datasets associated with this parameter

Dataset Name	Brief Description	Project	PI-Supplied Parameter Name
Kāneʻohe Bay Time-series - microbial community	Kāneʻohe Bay Time-series - microbial community	Pelagibacteromics	library_strategy, library_source, library_selection, library_layout, design_description
Kāneʻohe Bay Time-series - phytoplankton and biogeochemistry	Kāneʻohe Bay Time-series - phytoplankton and biogeochemistry	Pelagibacteromics	Amplicon_library_source, Amplicon_library_layout, Amplicon_design_description, Metagenome_library_strategy, Metagenome_library_selection, Metagenome_library_layout, Metagenome_design_description, Amplicon_library_strategy
Kelletia kelletii: DNA and RNA sequence	Kelletia kelletii: DNA and RNA sequence	KW connectivity	DATASTORE_region, LibraryLayout, LibrarySelection, LibrarySource, Assay_Type, AvgSpotLen, Bases, BioSampleModel, Center_Name, DATASTORE_filetype, DATASTORE_provider
Microorganisms associated with pyrosomes	16S rRNA sequencing pyrosome-associated microorganisms	Gelatinous Grazer Feeding	library_selection, library_layout, design_description, title, library_strategy, library_source
Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female	Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female	Diapause preparation, Neocalanus Gulf of Alaska	Experiment_Title, Study_Title
NCBI accessions for RNAseq data from apparently healthy and SCTLD-affected Montastraea cavernosa		Multi-Species Coral Disease	Library_strategy, Sequencing_Strategy, Sequencing_strategy_details, RNA_extraction_method
Northern California Current Microorganisms	16S rRNA gene of microorganisms	Gelatinous Grazer Feeding	library_source, library_selection, library_layout, design_description, title, library_strategy
Salp and pteropod associated microorganisms	16S rRNA sequencing salp and pteropod microorganisms	Gelatinous Grazer Feeding	title, library_strategy, library_source, library_selection, library_layout, design_description
Zostera marina whole genome resequencing	Zostera marina whole genome resequencing	ZosteraEcoGenomics	Library_Code, Library_type, Mapped_pcnt, Properly_paired_pcnt

Programs associated with this parameter

None

Status message

Database

Contribute Data

Parameter: seq_descrip