16S rRNA accessions: IODP Site 1244 |
16S rRNA gene amplicon sequence accessions, Hydrate Ridge, offshore Oregon |
16S rRNA gene Amplicon Library |
16S rRNA gene Amplicon Library accession numbers |
16S rRNA Sequences |
16S rRNA sequence data from venting fluids and microbial mats at Axial Seamount, 2011. |
16S V4 rRNA gene tag sequences from reef seawater |
16S V4 rRNA gene tag sequences from reef seawater |
515F-926R 16S rRNA accessions |
515F-926R 16S rRNA accessions, Mariana and Kermadec trenches, 2014 |
5a_field collection |
Field collection data for taxa detected in nauplii guts |
5b_nauplii gut taxa |
Taxa detected in field caught nauplii guts |
5c_BLAST results |
GenBank BLAST results of copepod nauplii gut contents |
5d_molecular id of copepod guts |
Identification of copepod gut contents |
Accession numbers (P. carterae viruses and field samples) |
Accession numbers for genetic sequences from virus-enriched field samples and P. carterae CCMP 645 culture co-infections |
Acropora cervicornis 16S Sequences Metadata and NCBI SRA accessions associated with Williams et al., 2022 |
Acropora cervicornis 16S Sequences Metadata and NCBI SRA accessions associated with Williams et al., 2022 |
Acropora cervicornis bleaching sequences |
Acropora cervicornis bleaching sequences |
Acropora palmata genotypes for clonal age |
Mutations at microsatellite loci of Acropora palmata |
Acropora palmata mutations |
Mutations at microsatellite loci of Acropora palmata |
Amplicon sequencing of ammonia oxidizing archaea amoA gene |
Amplicon sequencing of ammonia oxidizing archaea amoA gene from cruise KM1314, Aug. 8 - Sept. 4, 2013 in the northern Pacific |
AMT22 Population Samples |
Overview of population samples included in genetic analyses of Pleuromamma xiphias |
Anaerobic Peru Margin 2002 |
Sub-seafloor metatranscriptomes from anaerobic Peru Margin sediments collected on JOIDES Resolution, Leg 201. |
Anaerobic Sediment 18S rRNA amplicons |
Iberian Margin Anaerobic Sediment 18S rRNA amplicons. |
ARISA relative abundances |
ARISA relative abundances (bacterial community structure), San Pedro Channel, 5 depths |
Assembled metagenome sequences > 500 bp |
Assembled metagenome sequences > 500 bp from EPR, Lo'ihi, and control |
BATS_Feb_Aug_2012_diversity_rDNA_BLAST |
BLAST results from the Bermuda Atlantic Time Series (BATS) site in Feb. and Aug. 2012 |
BATS_Feb_Aug_2012_rDNA_sample_log |
sample log for 16S and 18S rDNA amplicons sequenced with 454 technology, BATS site, 2012 |
Bleached octocoral genotypes |
Bleached Octocoral Symbiont Cell Counts |
Breviolum antillogorgium microsatellite loci |
Microsatellite loci for B. antillogorgium cultures |
Bugula neritina Genotype Distribution |
Bugula neritina host genotype and symbiotic status of colonies along the East Coast |
Cannon_2013_T2: NCBI accessions |
Hemichordata and Echinodermata NCBI accessions |
Cannon_2014_S2: Hemichordata and Echinodermata sample log and accessions |
Hemichordata and Echinodermata transcriptome NCBI accessions |
Caribbean PaV1 survey |
Caribbean wide survey of PaV1 prevalence in adult lobsters, 2006-2007 and 2010-2011 |
CARP accession numbers |
Sequence accession numbers for coral acid rich proteins (CARPs) from Stylophora pistillata. |
Circovirus DNA Sequence Information |
DNA sequences of viruses associated with Copepods |
Community 16S rRNA gene sequences |
16S rRNA accessions |
Coral cDNA Expressed Sequences |
cDNA Expressed Sequence Tags for the corals Acropora palmate and Orbicella faveola |
Coral images and accession numbers |
Species images and accession numbers for tissue, mucus, and holobionts analyzed. |
coral life stages - Illumina |
Illumina sequenced 16S rRNA genes amplified from different life stages of 2 corals |
coral microbe T-RF - biogeography |
Hawaiian coral terminal-restriction fragment length polymorphism (T-RFLP) analysis |
coral microbe T-RF - temp stress |
Terminal restriction fragments from 16S rRNA genes amplified from coral-associated microbes, response to temperature stress |
Coral-bacterioplankton data from mesocosm experiments |
Bacterioplankton data from coral and coral mucus aquaria experiments. |
coral-microbe T-RF - development |
Specificity of associations between bacteria and the coral Pocillopora meandrina during early development |
coral-microbe T-RF - spawning |
T-RFLP, response of the microbial community to coral spawning, lagoon and reef flats, Oahu, 2006-7 |
Cuvierina SRA |
Cuvierina SRA, accessions, collection info |
dataset2_Krug_et_al_2012: Elysia accessions |
Elysia spp. accessions for COI, 16S, H3 |
dataset3_Supp1_Krug_et_al_2011: Elysia sequences |
Accessions for COI, 16S, H3 for 18 Elysia species |
dataset4_Krug_et_al_2012: Philine sequences |
Accessions for 16S for Philine species |
dataset5_Vendetti_et_al_2012: Elysia pusilla sequences |
Accessions for COI, 16S, H3 from Elysia pusilla and E. spp. |
dataset6_Krug_et_al_2013: Sequences |
Accessions for COI, H3 for three species complexes |
dataset8- Oxynoe sequence data |
Species names, sample codes, and collection details for sequenced taxa used in phylogenetic analyses. |
Deep Biosphere Eukaryotic rRNA |
Sub-seafloor sediment eukaryotic rRNA collected on JOIDES Resolution Legs 201 and 204, R/V Maria Merian at North Pond, and R/V Meteor at the Benguela Upwelling System. |
Delta Nitrification Study - GenBank Accession Numbers |
GenBank accession numbers for ammonia oxidizer genes. |
Delta Nitrification Study - Potential Nitrification Rates |
Nitrification rates and ammonia oxidizer gene abundances |
DHAB halocline sediment pyrotags - eukaryotes |
454 pyrotags for Eukaryote taxa in deep hypersaline anoxic basin (DHAB) halocline sediments |
DHAB halocline sediment pyrotags - prokaryotes |
454 pyrotags for Bacterial and Archaeal taxa in deep hypersaline anoxic basin (DHAB) halocline sediments |
Diatom amplicon sequencing variants from Narragansett Bay 2008-2014 |
Diatom amplicon sequencing variants from Narragansett Bay 2008-2014 |
Diatom microbiome |
Identification of microbiome from different Pseudo-nitzschia species |
DNA microsatellite alleles - Eelgrass ramets |
DNA microsatellite alleles for eelgrass ramets from two sites in MA |
DNA microsatellite alleles - Flowering shoots and seeds |
DNA microsatellite alleles from flowering shoots and seeds |
Doliolid diet: zooplankton abundance |
Zooplankton abundances |
Domel_2017_T1: Pallenopsis patagonica specimen and outgroups with accessions |
Pallenopsis patagonica specimen and outgroups with accessions |
Dorado Outcrop basalt DNA sequences |
Accession numbers for clone and Illumina amplicon sequence libraries from Dorado Outcrop basalts |
Fe_Vit12_MetaT_Co-Limitation_RossSea_2014 |
Iron and vitamin B12 metatranscriptomincs co-limitation in Ross Sea waters, 2014 |
Fossil Seal Bulk Isotopes 14C |
Location, weathering, bulk isotope, and 14C data for fossil seals from the western Ross Sea, Antarctica |
Gene Abundance |
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Gnathiid blood meal identification results |
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Goby_Sibship_2018 |
Genotype data for E. lori individuals sequenced at 71 microsatellites. |
H. longicornis Population Structure |
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Halanych-Kocot_2014_T1: NCBI accessions |
Antarctic invertebrate collection locations and NCBI SRA accessions |
Halanych-Kocot_2014_T3: Best TLR genes from BLASTP search |
Best toll-like receptors (TLR) genes from Lophotrochozoa BLASTP search |
Halanych-Kocot_2014_T4: Best other LRR genes from BLASTP search |
Best other leucine-rich repeat (LRR) genes from BLASTP search |
Halanych_2013_T1: NCBI accessions |
NCBI accessions |
Haloptilus longicornis SRA |
H. longicornis SRA, accessions, collection info |
Harder_2016_T1: sea spider Pallenopsis sampling sites and COI NCBI accessions |
Sea spider Pallenopsis sampling sites and COI NCBI accessions |
Havird_2015_T1: NCBI accessions: COX and PXDN |
NCBI accessions |
Heat priming in Nematostella vectensis: Development of larvae past the planula stage |
Heat priming in Nematostella vectensis: Development of larvae past the planula stage |
Heat priming in Nematostella vectensis: Dose-response curves (DRC) quantifying survival after exposure to heat ramps |
Heat priming in Nematostella vectensis: Dose-response curves (DRC) quantifying survival after exposure to heat ramps |
Heat priming in Nematostella vectensis: Expression of heat shock protein 70 (HSP70) |
Heat priming in Nematostella vectensis: Expression of heat shock protein 70 (HSP70) |
Heat priming in Nematostella vectensis: Heat tolerance (survival) of juveniles |
Heat priming in Nematostella vectensis: Heat tolerance (survival) of juveniles |
Heat priming in Nematostella vectensis: Lethal temperature 50s (LT50s) |
Heat priming in Nematostella vectensis: Lethal temperature 50s (LT50s) |
Heat priming in Nematostella vectensis: Long-term growth |
Heat priming in Nematostella vectensis: Long-term growth |
Heat priming in Nematostella vectensis: Respiration rates and protein content of larvae |
Heat priming in Nematostella vectensis: Respiration rates and protein content of larvae |
Heat priming in Nematostella vectensis: Sizes of larvae |
Heat priming in Nematostella vectensis: Sizes of larvae |
Host-symbiont reinfections |
Symbiont removed and anemone reinfected with one of two strains of Symbiodinium |
Host-Symbiont respiration relationship |
Host-symbiont respiration related to symbiont density; anemones from Key Largo |
Illumina Sequences |
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IRN-BRU MV1405 Transect 5 BioGeoChem |
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Isolates |
Isolates from Mariana and Kermadec trenches, 2014 |
ITS_sequence_accessions |
Diatom ribosomal DNA sequence accession numbers. |
Janosik_2013_T2: outgroup species and accessions |
Outgroup species and accessions |
Janosik_2013_T3: matrix of Odontasteridea morphological characters |
Matrix of Odontasteridea morphological characters |
JTMD Mytilus population genetics |
Population analysis and metagenomics of Japanese tsunami marine debris mussels |
kinetoplastid SSU rRNA seq. |
Microbial metatranscriptomics: upper and lower halocline water column |
Krill barcodes |
Euphausiid DNA barcode metadata and accession numbers from global oceans |
Long-term PaV1 survey |
Long-term PaV1 lobster surveys Florida bayside, 1999-2014 |
MBRS Symbiodinium OTU |
Symbiodinium OTU |
McIlroy_2016: Symbionts genotypes in Orbicella faveolata |
McIlroy_2016: Genotype of symbionts detected in Orbicella faveolata recruits over time |
McIlroy_2017: Symbionts genotypes in Orbicella faveolata |
McIlroy_2017: Genotype of symbionts detected in Orbicella faveolata recruits |
Menidia menidia - Genotyped Offspring |
Information about the offspring used in a study of survival of Menidia menidia larvae under high CO2 conditions. |
Menidia menidia - Genotyped Parents |
Genotyped parents used in a study of survival of Menidia menidia larvae under high CO2 conditions. |
Metabarcoding zooplankton at station ALOHA: NCBI SRA accession numbers |
NCBI Sequence Read Archive (SRA) accession numbers for fastq sequence files for each zooplankton community sample |
Metabarcoding zooplankton at station ALOHA: OTU tables and fasta files |
Operational taxonomic unit (OTU) tables and fasta files for representative sequences from each OTU |
Metagenomes - Iberian Margin |
Iberian Margin Anaerobic Sediment Metagenomes. |
Metagenomic sequences: IODP Site 1244 |
NCBI accession numbers for metagenomic sequences: IODP Site 1244, Hydrate Ridge, offshore Oregon |
metatranscriptomics - upper_lower halocline |
Microbial metatranscriptomics: upper and lower halocline water column |
Microbe priority experiment counts |
Microbe priority experiment counts (OTU counts) |
Microbes priority annotations (OTU taxonomy) |
Microbes priority annotations (OTU taxonomy) |
Microbial 16S rRNA gene amplicon SRA numbers |
Microbial 16S rRNA gene amplicon SRA numbers |
Microbial community composition of the Cinder Cones Cold Seep |
Microbial community composition of the Cinder Cones Cold Seep |
Microbial eukaryotic diversity: Axial Seamount SRA |
Axial seamount SRA |
Microbial eukaryotic diversity: Gorda Ridge SRA |
Gorda Ridge SRA |
Microbial incubation diversity and geochemistry |
Microbial diversity and geochemistry of marine sediment mesocosm, Cape lookout bight, North Carolina |
Microsatellite primers for Pollicipes elegans |
Microsatellite primer sequences from Pollicipes elegans |
MtCOI sequence accessions - Pollicipes elegans |
Cytochrome oxidase I DNA sequences from Pollicipes elegans |
MVCO environmental measurements and high throughput sequencing |
Links to high throughput sequencing data and associated MVCO environmental measurements |
MVCO Syndiniales amplicon ASV counts |
MVCO Syndiniales amplicon ASV counts |
Nematostella ocean acidification experiment: Larval heat tolerance |
OA experiment: Nematostella larval heat tolerance |
Nitrite reductase genes sequence accessions |
Nitrite reductase genes sequence accessions |
Oyster Cohort Genetics |
Database of DNA microsatellite alleles for hatchery-produced oyster cohorts |
Oyster Cohort Traits |
Performance traits (e.g., survival, growth, size) for hatchery-produced oyster cohorts |
Oyster genetic identity and parasite community structure |
Oyster genetic identity and parasite community structure |
P. xiphias SRA |
P. xiphias SRA, accessions, collection info |
Palau lakes: invertebrate barcodes |
Palau lakes: invertebrate barcodes |
Palau lakes: voucher summary |
Palau lakes: voucher summary |
Peru Margin iTAGs |
Fungal iTAG analyses on Peru Margin sediment core samples |
planktonic ciliates: DNA accessions |
Planktonic ciliate DNA sequence accession numbers at NCBI GenBank |
Pleurochrysis carterae virus production |
Analysis of temporal dynamics of three virus types (ssDNA PcCV, dsDNA PLV, dsDNA PsEV) persistently co-infecting P. carterae CCMP645 |
Pocillopora haplotypes at Moorea by site and depth |
Pocillopora haplotypes at Moorea by site and depth |
Poland_2013: Polyp count by symbiont type summary |
Polyp count by symbiont type summary |
Poland_2013: Polyp count with multiple symbiont types |
Polyp count with multiple symbiont types |
Poland_2013: Symbiont types by site and month |
Symbiont types by site and month |
Pollicipes elegans aggregation genotypes |
Genotype data for the three adult barnacle aggregations - Pollicipes elegans |
Pollicipes elegans larval genotypes |
Larval genotype data for Pollicipes elegans |
poly-A mRNA |
The eukaryotic (poly-A) metatranscriptome for Canterbury Basin |
Polychaete DNA sequences |
DNA sequence data deposited on GenBank for polychaetes used in the project studying the evolution and mechanics of burrowing. |
Prochlorococcus and Synechococcus nitrite accumulation in batch culture |
Prochlorococcus and Synechococcus nitrite accumulation in batch culture |
PRS bacteria identification |
Culture-independent identification of bacteria present in the pressure-retaining seawater (PRS) sampler deployed during Leggo drop 1 |
Pxiphias PopStructure mtDNA |
Pleuromamma xiphias mitochondrial genetic data (Atlantic; mtDNA) for analyses of population structure across the Atlantic Ocean |
qPCR |
Quantitative PCR data from sediment samples |
qPCR |
Quantitative PCR data from sediment samples |
qPCR data for archaeal amoA ecotypes |
Abundance of ammonia monooxygenase subunit A (amoA) genes determined using TaqMan qPCR. |
qPCR data from the Cariaco Meta-Omics Cruises |
qPCR data from the CAR212 and CAR216 cruises. |
Quantitative PCR data |
Quantitative PCR targeting Trichodesmium, UCYN-A, UCYN-B, gamma-24774A11, and Het1, based on the nifH gene. |
Raw LC-MS/MS and DNA |
Raw LC-MS/MS data, with list of identified peptides, and DNA sequences. |
Red Invasive Seaweed - Raw Genotypes |
The genotypes from 9 microsatellites generated on individuals of the red invasive seaweed Gracilaria vermiculophylla. |
RHB_ostracods |
Ostracod species from the Ron Brown cruise - Sargasso Sea |
Rockfish microhaplotype sequences |
Links to sequence files associated with this project |
Ross Sea sequences |
Ross Sea sequences link |
Salp genome and transcriptome |
Antarctic salp genome and RNAseq transcriptome |
SBDOM11 mini-remineralization expt. |
bacterial abundance, growth rates, and DOC from SBDOM11 cruise |
Sciaenid egg identification |
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SCTLD rapid microbiome characterization |
SCTLD microbiome |
Seawater data and site descriptions |
Site descriptions and physical environmental conditions of reefs where sampling occurred. |
SEEPC Bivalve DNA Barcoding Results |
Bivalve larvae DNA barcode results |
Sequence data accession numbers from mesocosm experiments |
Sequence data accession numbers originating from coral and coral mucus experiments. |
Single amplified genomes |
Single amplified genomes (SAGs) |
Single-cell genomics of Chloroflexi |
Chloroflexi accessions |
Skeletal Organic Matrix Proteins |
LC-MS/MS sequenced proteins extracted from Stylophora pistillata skeleton. |
South Atlantic Bight nitro cruises 2014 |
Environmental data, nitrifier abundance, ammonia oxidation rates from the South Atlantic Bight |
South Pacific Gyre 16S Amplicons |
Accession numbers for raw sequence reads; samples collected on cruise KNOX02RR. |
soxB Sequences |
soxB gene sequence data from microbial mats at Axial Seamount, 2011. |
SPOT virus 18S rDNA peak abund |
SPOT Microbial Observatory Protist 18S rDNA TRFLP relative peak abundance |
SPOT virus 3H peak abund |
SPOT Microbial Observatory Myovirus g23 3' TRFLP relative peak abundance |
SPOT virus 5H peak abund |
SPOT Microbial Observatory Myovirus g23 5' TRFLP relative peak abundance |
SPOT virus ARISA |
SPOT Microbial Observatory Bacterial ARISA relative peak abundance |
Sulfitobacter phage accessions |
Sulfitobacter phage accessions |
Symbiont accession numbers |
Accession numbers of symbiotic algae in coral |
Symbiont type in recovering corals |
symbiont type in recovering Porites divaricata corals |
T. pseudonana starve-recover experiments: Cell information |
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T. pseudonana starve-recover experiments: Gene information |
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T. rotula Common Garden Experiment |
T. rotula Common Garden Experiment |
T. rotula microbiome global sample |
T. rotula microbiome global sample |
Temporal genetic patterns in plankton |
Temporal genetic patterns in P. xiphias and H. longicornis - Mitochondrial data, station ALOHA |
Trichodesmium AHL metatranscriptomes_AE1409 |
GenBank Trichodesmium accessions and associated metadata |
Trichodesmium sequence accessions |
GenBank Trichodesmium accessions and associated metadata |
V4 amplicon sequencing of coral tissue |
Accession numbers and locations of species analyzed. |
V4 SSU rRNA gene primer validation for reef seawater |
Partial SSU rRNA genes of bacteria and archaea from reef seawater samples produced using 515F/806R and 515F/806RB primers |
Whelan_2014_T3: toxin genes identified in Nemertean species |
Toxin genes identified in Nemertean species |
Whole community metatranscriptomes |
Whole community (3 domain) metatranscriptomes for Peru Margin and Canterbury Basin subsurface sediment core samples |
Whole genome sequence data for Pisaster ochraceus |
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WS1209 strains |
Microbial culture collection, strain IDs, locations and depth from cruise WB1209 |
ZEN 2014 Site Survey Data |
Eelgrass 2014 Site Survey Data |
Zostera experiment community biomass |
Diversity and biomass of eelgrass inhabitants |