Instrument: Fluorescence Microscope

Acronym:

External Identifier:

» skos:exactMatch http://vocab.nerc.ac.uk/collection/L05/current/LAB06/

Description

Instruments that generate enlarged images of samples using the phenomena of fluorescence and phosphorescence instead of, or in addition to, reflection and absorption of visible light. Includes conventional and inverted instruments.

Datasets

Dataset Name	Brief Description
1_copepod gut fluorescence	Copepod nauplii and adult gut epifluorescence
4a_gut area-pixels	Pseudodiaptomus marinus gut area measured in pixels
4c_gut fullness index	Copepod gut fullness index measured by pixels
4d_gut fullness - two diets	Copepod gut fullness on two tintinnid diets
active surface bacteria	Microbial abundance, activity, and nutrient concentrations in Delaware Bay
AE1620 bottles: Biogeochemical and Microbial data	bottle data AE1620
AE1703 bottles: Biogeochemical and Microbial data	bottle data AE1703
Amino Acid d15N transfer	Phytoplankton and grazers grown in lab chemostats
ARISA relative abundances	ARISA relative abundances (bacterial community structure), San Pedro Channel, 5 depths
Bacterial cell counts and DOC	bacterial abundance and DOC
BATS discrete bottle data	BATS discrete bottle data
Benthic foraminiferal abundances	Benthic foraminiferal abundances from Mud Patch multicores
Biogeochemical survey 2015-2018	Biogeochemical data from cruises AT32, AT34, AT38, AT39-06
BIOS-SCOPE survey biogeochemical data
California Mussel Larvae Experiments	Carbonate chemistry, shell growth, and respiration data from laboratory experiments on California mussel larvae.
Cell biovolumes	Biovolume data from samples obtained on LMG1411.
Chemistry and cell counts	Chemistry and cell counts of formation fluids from North Pond
coral calcification and energy reserves	Coral calcification, chlorophyll a content, algal density, energy reserves, tissue biomass.
Coral-bacterioplankton data from mesocosm experiments	Bacterioplankton data from coral and coral mucus aquaria experiments.
Coralline algae growth	Linear extension measurements of species from two common morphotypes of coralline algae found in Sitka Sound, AK.
Crocosphaera iron/warming experiments	warming experiments
Data Set 3A: Utilization of dissolved organic carbon by a natural bacterial community as a function of pCO2	Data Set #3A: Utilization of dissolved organic carbon by a natural bacterial community as a function of pCO2
Ehux growth rates for thermal response curve	Ehux growth rates across thermal range
Ehux growth rates under thermal variation	Ehux growth rates under thermal variation
EN596 discrete samples	Discrete samples and rate measurements collected aboard the RV Endeavor cruise EN596
EN638 Bulk Cell Counts
Epifluorescence Microscopy Cell Size and Biomass	Epifluorescence Microscopy Water Column Samples from Subtropical and Subantarctic Waters East of New Zealand
ETNP Microbial Abundances	Estimated abundances of viruses and bacteria via epifluorescence microscopy in the ETNP
FL Stegastes Partitus Otolith Increment Data	Otolith increment data from Florida Keys Stegastes partitus, 2003-08.
FL Stegastes Partitus Otolith Summary Data	Summary of otolith microstructure data from Florida Keys Stegastes partitus, 2003-08.
Fluids cell counts	Microbial cell counts derived from the formation fluids recovered from the CORKs installed at the North Pond in 2012 and 2014.
Geochemistry and Microscopy from Incubation Experiments	Geochemistry and Microscopy from Incubation Experiments
Geochemistry Summary	Geochemistry summary data: IODP Expedition 337 single cell isotope incorporation of 1H, 2H, 12C14N, 12C15N, 12C12C, 12C13C ions
Grazing experiment 2 and 3: ingestion	Microzooplankton ingestion on low to high pCO2 acclimated E. huxleyi (Favella and Oxyrrhis as grazers)
Grazing experiment 4a: short term grazing by Gyrodinium	Short term data for low-high pCO2 acclimated Rhodomonas sp. cultures ingested by Gyrodinium grazers
Grazing experiment 4b: short term grazing by Favella	Short term data for low-high pCO2 acclimated Rhodomonas sp. cultures ingested by Favella grazers
Grazing experiment 5: long term grazing and growth by Oxyrrhis	Long term ingestion and growth by Oxyrrhis for low-high pCO2 acclimated Rhodomonas sp.
Grazing experiment 5: short term grazing	Short term ingestion by Oxyrrhis for low-high pCO2 acclimated Rhodomonas sp.
Grazing experiment 6: long term grazing by Coxliella and growth	Long term ingestion and growth by Coxliella for low-high pCO2 acclimated Rhodomonas sp.
Grazing experiment 6: short term grazing	Short term ingestion by Coxliella for low-high pCO2 acclimated Rhodomonas sp.
Grazing experiment 7: long term grazing by Gyrodinium and growth	Long term ingestion and growth by Gyrodinium for low-high pCO2 acclimated Rhodomonas sp.
growth phase exopolymers	Exopolymer and carbohydrate production by diatoms with growth.
Host-symbiont reinfections	Symbiont removed and anemone reinfected with one of two strains of Symbiodinium
Host-Symbiont respiration relationship	Host-symbiont respiration related to symbiont density; anemones from Key Largo
Incubations: cell abundance, carbon fixation rates, nitrates	Carbon fixation rates Crab Spa
Initial prey abundance and biomass: MEPS 2017	Initial prey abundance and biomass: MEPS 2017
IODP360 - Replicate Cell Counts
Lipid_Dendraster_OA_Expt2017	Lipid_Dendraster_OA_Expt2017
MEDEA-II CARD FISH cell counts	MEDEA-II stations for CARD FISH samples
Microbial abundances from the Cariaco Basin	Microscopy data from the CAR212 and CAR216 cruises.
Microbial incubation diversity and geochemistry	Microbial diversity and geochemistry of marine sediment mesocosm, Cape lookout bight, North Carolina
Microscopy Counts	Microscopy Counts
Minutocellus polymorphus TEP and Microaggregate Formation: Cell Abundance
Minutocellus polymorphus TEP and Microaggregate Formation: Suspended Microaggregates
MO - biogeochemical and microbial field surveys	Biogeochemical and microbial field surveys from the BATS site, 2009-2013
MO - virioplankton abund-FISH probe	Virioplankton abundance at BATS site using FISH probe, 2003-2011
MO - virioplankton abundance	Virioplankton abundance at BATS site, 2000-2011
NanoSIMS HCN - All Data	IODP Expedition 337 single cell isotope incorporation of 1H, 2H, 12C14N, 12C15N. 12C12C, 12C13C ions
Naupliar ingestion: MEPS 2017	Naupliar grazing by Parvocalanus crassirostris and Bestilina similis nauplii (uncorrected rates)
OA Feeding Physiology M. californianus	Feeding physiology data of Mytilus californianus larvae in OA conditions
Organic Phosphorus NEXFS Standards	Near Edge X-ray Fluorescence Spectroscopy Data for standard organic phosphorus compounds
oxidative stress TEP	Exopolymer production by phytoplankton under oxidative stress.
phyto_abundance_Ant2	Plankton abundances from Antarctic phytoplankton experiments
Picocyanobacteria TEP: Cell Abundance
Picocyanobacteria TEP: Growth Rates
Plankton size spectra	Plankton size spectra from 5 projects: CCE LTER, HOT, CRD FluZIE, BLOOFINZ-GoM, and SalpPOOP from 2004-2018
Pmin strain feeding	Data from an experiment that measured the occurrence of feeding among 4 Prorocentrum minimum strains on the cryptophyte Teleaulax amphoxeia
Pmin strain feeding 2	Data from an experiment that measured the occurrence of feeding among 8 Prorocentrum minimum strains on fluorescently labeled bacteria or the cryptophyte Teleaulax amphioxeia
Protist and prokaryote cell counts	Protist numbers in subtropical North Atlantic at and below 100 m
Protist Carbon - IO	Protist carbon from microscopy samples collected in the Argo Basin of the Eastern Indian Ocean on R/V Roger Revelle cruise RR2202 from Feb to Mar 2022
protist cell counts	Protist numbers in subtropical North Atlantic at and below 100 m
reconstructed genomes	Reconstructed genomes from North Pond
RV Atlantic Explorer BATS BV50: CO2 and PO4	CO2 fixation and PO4 uptake rates
Sequence data accession numbers from mesocosm experiments	Sequence data accession numbers originating from coral and coral mucus experiments.
Shotgun Proteomics of Bering Sea algal incubations.
SPOT virus 18S rDNA peak abund	SPOT Microbial Observatory Protist 18S rDNA TRFLP relative peak abundance
SPOT virus 3H peak abund	SPOT Microbial Observatory Myovirus g23 3' TRFLP relative peak abundance
SPOT virus 5H peak abund	SPOT Microbial Observatory Myovirus g23 5' TRFLP relative peak abundance
SPOT virus ARISA	SPOT Microbial Observatory Bacterial ARISA relative peak abundance
SPOT virus environmental	Environmental data for SPOT virus sampling
Subseafloor Microbial Cell Counts	Microbial cell counts in sediment cores collected during KN195-03.
Sulfide production rates Desulfovibrio hydrothermalis AM13	Effects of temp on biomass and sulfide production in Desulfovibrio hydrothermals AM13
Sulfur NEXFS Standards	Sulfur Near Edge X-ray Fluorescence Spectroscopy Data for standard materials
Symbiodinium genotype responses to Nitrogen	Symbiodinium genotype responses to nitrogen (Expt 2)
Thalassiosira wessiflogii growth rate and TEP	Growth rate experiment with the diatom Thalassiosira wessiflogii in semi-continuous culture.
Tracer data Palau corals	Palau coral nutrient transfer tracer experiments
V4 SSU rRNA gene primer validation for reef seawater	Partial SSU rRNA genes of bacteria and archaea from reef seawater samples produced using 515F/806R and 515F/806RB primers
viral and bacterial counts	Viral and bacterial counts from filtered water, stained with SYBR Green and counted using epifluorescent microscopy.

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Instrument: Fluorescence Microscope